rgdal 1.1-1 bug?
James & all-- With your shapefile I can reproduce your problem under Windows 7x64 in R 3.2.2 rgdal_1.1-1 sp_1.2-1, but not R 3.1.2 rgdal_0.9-3 sp_1.1-1 or earlier. Both rgdals are linked to gdal 1.11.2 released 2015/02/10. I also can reproduce the issue writing to & reading from GeoJSON instead of shapefiles. Files written by rgdal 1.1-1 have the lines connecting holes when read by rgdal_0.9-3, but files written by rgdal_0.9-3 are read fine by 1.1-1. The rarity about the shapefile in question is that it has 57 holes in the same polygon, which (along with the lines connecting holes) suggests that the issue might be related to SpatialPolygons not assigning holes to specific (non-hole) polygons, see: http://finzi.psych.upenn.edu/R/library/rgeos/html/comment-functions.html I don't have time (or ability) to go much further right now in terms of finding the change, but perhaps someone else can? Tom 2
On Fri, Dec 4, 2015 at 2:34 PM, Michael Sumner <mdsumner at gmail.com> wrote:
On Sat, 5 Dec 2015 at 05:26 Worrall, James -FS <jworrall at fs.fed.us> wrote:
[image: image001.gif] We have been happily using rgdal to read and write ESRI Shapefiles. Recently my colleague began using it. We noticed that after saving and reopening files, many polygons had been reconfigured, as if the order of the vertices had become jumbled and there were many straight lines cutting across the polygon. I?m not sure if an image can be pasted in this list but I?ll try. I did the same thing on my computer and the problem did not occur. We found that I had an older version of rgdal, 1.0-7. When I updated it to 1.1-1, the problem occurred just as it had with her. Simply opening and saving a shapefile causes the problem and essentially jumbles the shapefile. The bug, if it is one, was introduced after 1.0-7
I can't reproduce this. Can you provide a reproducible example? Also,
"opening and saving a shapefiles" is not the way to describe what is done
in the usual rgdal workflow, so it's not clear what you did. Here's what I
tried:
library(maptools)
data(wrld_simpl)
library(rgdal)
#rgdal: version: 1.1-1, (SVN revision 572)
# Geospatial Data Abstraction Library extensions to R successfully loaded
# Loaded GDAL runtime: GDAL 1.11.2, released 2015/02/10
# Path to GDAL shared files: E:/inst/R/R/library/rgdal/gdal
# GDAL does not use iconv for recoding strings.
# Loaded PROJ.4 runtime: Rel. 4.9.1, 04 March 2015, [PJ_VERSION: 491]
# Path to PROJ.4 shared files: E:/inst/R/R/library/rgdal/proj
# Linking to sp version: 1.2-1
writeOGR(wrld_simpl, ".", "1.1-1", "ESRI Shapefile")
x1 <- readOGR(".", "1.1-1")
plot(x1) ## all good
sessionInfo()
R version 3.2.2 Patched (2015-08-27 r69201)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 8.1 x64 (build 9600)
locale:
[1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252
[3] LC_MONETARY=English_Australia.1252 LC_NUMERIC=C
[5] LC_TIME=English_Australia.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rgdal_1.1-1 maptools_0.8-37 sp_1.2-1
loaded via a namespace (and not attached):
[1] tools_3.2.2 foreign_0.8-66 grid_3.2.2 lattice_0.20-33
Cheers, Mike.
I will attach images of one complex polygon, before and after saving with writeOGR. Jim
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