rPython installation problem
Hello all, I need to combine R and Python to process large raster files and I would like to use the "rPython" library for direct transformation of the data objects created using those environments. However, when I try to install it, it produces the following error related to the python libraries (see below). I just installed the Anaconda python distribution locally (no admin rights) in my home folder (Linux CentOS), which might be causing the problem, but I do not know how to deal with this issue, so any help is welcome! Thank you very much and cheers, Javier
install.packages('rPython')
Installing package into /home/majavie/R/x86_64-redhat-linux-gnu-library/3.0 (as lib is unspecified) trying URL 'http://cran.mirror.garr.it/mirrors/CRAN/src/contrib/rPython_0.0-4.tar.gz' Content type 'text/plain' length 37034 bytes (36 Kb) opened URL ================================================== downloaded 36 Kb * installing *source* package rPython ... ** package rPython successfully unpacked and MD5 sums checked a specific python version to use was not provided defaulting to the standard python in the system checking for gcc... gcc -m64 -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -m64 -std=gnu99 accepts -g... yes checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/home/majavie/anaconda/include/python2.7 -I/home/majavie/anaconda/include/python2.7 -D PYTHONLIBFILE=libpython2.7.so -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c pycall.c -o pycall.o gcc -m64 -std=gnu99 -shared -L/usr/local/lib64 -o rPython.so pycall.o -lpthread -ldl -lutil -lm -lpython2.7 -Xlinker -export-dynamic -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lpython2.7 collect2: ld returned 1 exit status make: *** [rPython.so] Error 1 ERROR: compilation failed for package rPython * removing /home/majavie/R/x86_64-redhat-linux-gnu-library/3.0/rPython * restoring previous /home/majavie/R/x86_64-redhat-linux-gnu-library/3.0/rPython The downloaded source packages are in /tmp/RtmpfPBtPF/downloaded_packages Warning message: In install.packages("rPython") : installation of package rPython had non-zero exit status