residuals by subtracting point values from grid values
Hi Els, I think you want to do: idw.pred.zn <- idw(zinc ~ 1, meuse.pred, meuse.val) and for kriging cross-validation: krige.pred.zn <- krige(zinc ~ 1, meuse.pred, meuse.val,model = vgm(140000,"Sph",600,0.1)) krige.pred.zn$res = krige.pred.zn$var1.pred - meuse.val$zinc krige.pred.zn$zscore = krige.pred.zn$res/sqrt(krige.pred.zn$var1.var) You cannot do crossvalidation with meuse.grid, as you dont have zinc-observations in the data set. As Tom said, this is more or less the same as you can get a lot easier using krige.cv (with nfold=3), unless you are planning to recalculate the variogram for each fold. Cheers, Jon
Els Verfaillie wrote:
Hi list, I've splitted my dataset (e.g. the meuse dataset) into random 2 parts (2/3 for prediction and 1/3 for validation). I've done an interpolation (e.g. IDW, but I also want to do it with different kriging techniques) based on the prediction dataset. Now I want to subtract the "zinc" values from the validation dataset (i.e. a SpatialPointsDataFrame with 52 points) from the "var1.pred" values from the interpolation (i.e. a SpatialPointsDataFrame with 3103 points) to obtain the residuals. This of course only on the location of the 52 points from the validation dataset. Then I want to calculate validation indices. This is my code: #Validation and prediction dataset permid <- sample(155) idportion <- 1:round(2*155/3) meuse.pred <- meuse[permid[idportion], ] meuse.val <- meuse[permid[-idportion], ] #idw based on meuse.pred idw.pred.zn <- idw(zinc ~ 1, meuse.pred, meuse.grid) I know that I could use the "krige.cv" to do an n-fold cross-validation, but I would like to do it based on the above method. Any suggestions? Thanks a lot! Els
______________________________________________ Dr. Els Verfaillie Carto-GIS cluster Ghent University (UGent) - Department of Geography Krijgslaan 281 - S8 B- 9000 Gent Belgium ______________________________________________ [[alternative HTML version deleted]] _______________________________________________ R-sig-Geo mailing list R-sig-Geo at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-geo