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error when trying to use RStudio within GRASS

Sarah Goslee

Sun, Dec 23, 2018 5:06 AM

Hi Carlos,

"This error does not show when using R instead of RStudio."

Then you probably need to use RStudio help channels. You *might* get lucky
here, but this is an R help list, not RStudio help.

Sarah

On Sun, Dec 23, 2018 at 7:44 AM Carlos Rodr?guez <arrowtado at gmail.com>
wrote:

Hi guys,

I have the following error when using Rstudio within GRASS 7.2.2
(stand-alone version) in Windows 10:



Location Spearfish_60

points <- readVECT("archsites")

Error in if (get("SYS", envir = .GRASS_CACHE) == "WinNat" && nchar(WN_bat)
==  :

  missing value where TRUE/FALSE needed

traceback()

7: parseGRASS(cmd, legacyExec = legacyExec)

6: doGRASS(cmd, flags = flags, ..., parameters = parameters, echoCmd =
echoCmd,

       legacyExec = legacyExec)

5: execGRASS("v.in.ogr", flags = ifelse(ignore.stderr, c("f", "quiet"),

       "f"), intern = TRUE, ignore.stderr = ignore.stderr)

4: .read_vect_non_plugin(vname = vname, layer = layer, type = type,

       remove.duplicates = remove.duplicates, ignore.stderr =
ignore.stderr,

       pointDropZ = pointDropZ, driver = driver, with_prj = with_prj,

       with_c = with_c)

3: tryCatchList(expr, classes, parentenv, handlers)

2: tryCatch({

       stopifnot(is.logical(plugin) || is.null(plugin))

       stopifnot(is.logical(ignore.stderr))

       if (missing(layer))

           layer <- "1"

       layer <- as.character(layer)

       stopifnot(is.logical(with_c))

       if (!is.null(driver) && driver == "GRASS")

           plugin <- TRUE

       if (!requireNamespace("rgdal", quietly = TRUE)) {

           stop("rgdal not available")

       }

       if (is.null(plugin)) {

           ogrD <- rgdal::ogrDrivers()$name

           plugin <- "GRASS" %in% ogrD

       }

       if (plugin) {

           res <- .read_vect_plugin(vname = vname, layer = layer,

               type = type, ignore.stderr = ignore.stderr, pointDropZ =
pointDropZ,

               mapset = mapset)

       }

       else {

           res <- .read_vect_non_plugin(vname = vname, layer = layer,

               type = type, remove.duplicates = remove.duplicates,

               ignore.stderr = ignore.stderr, pointDropZ = pointDropZ,

               driver = driver, with_prj = with_prj, with_c = with_c)

       }

   }, finally = {

       if (get.suppressEchoCmdInFuncOption()) {

           tull <- set.echoCmdOption(inEchoCmd)

       }

   })

1: readVECT("archsites")





This error does not show when using R instead of RStudio. I?ve searched
around and tried to implement the fixes proposed for similar issues
(unsuccessfully).  I feel that it might be a very simple issue, but I am
stuck and I will appreciate any help. Here the Sys.getenv() and
sessionInfo(), in case there are needed.

Sys.getenv()

__COMPAT_LAYER              RunAsAdmin DetectorsWin7

ADSK_CLM_WPAD_PROXY_CHECK   FALSE

ALLUSERSPROFILE             C:\ProgramData

APPDATA                     C:\Users\...\AppData\Roaming

CLICOLOR_FORCE              1

CommonProgramFiles          C:\Program Files\Common Files

CommonProgramFiles(x86)     C:\Program Files (x86)\Common Files

CommonProgramW6432          C:\Program Files\Common Files

COMPUTERNAME

ComSpec                     C:\WINDOWS\system32\cmd.exe

DISPLAY                     :0

DriverData                  C:\Windows\System32\Drivers\DriverData

FP_NO_HOST_CHECK            NO

GDAL_DATA                   C:/Program Files/R/R-3.5.1/library/rgdal/gdal

GEODA_GDAL_DATA             C:\Program Files\GeoDa Software\data

GEODA_OGR_DRIVER_PATH       C:\Program Files\GeoDa Software

GFORTRAN_STDERR_UNIT        -1

GFORTRAN_STDOUT_UNIT        -1

GRASS_MESSAGE_FORMAT        text

GRASS_PAGER                 cat

HOME                        C:/Users/?/Documents

HOMEDRIVE                   C:

HOMEPATH                    \Users\...

JRI_HOME
C:\Users\...\Documents\R\win-library\3.4\rJava\jri

LOCALAPPDATA                C:\Users\...\AppData\Local

LOGONSERVER                 \\...

MSYS2_ENV_CONV_EXCL         R_ARCH

NUMBER_OF_PROCESSORS        8

OneDrive                    C:\Users\...\OneDrive

OS                          Windows_NT

PATH                        C:\Program


Files\R\R-3.5.1\bin\x64;C:\Rtools\bin;C:\ProgramData\Oracle\Java\javapath;c:\Rtools\gcc-4.6.3\bin;C:\Program

                            Files (x86)\Intel\iCLS Client\;C:\Program

                            Files\Intel\iCLS


Client\;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Program

                            Files\Intel\Intel(R) Management Engine

                            Components\DAL;C:\Program Files\Intel\Intel(R)

                            Management Engine Components\IPT;C:\Program
Files

                            (x86)\Intel\Intel(R) Management Engine

                            Components\DAL;C:\Program Files
(x86)\Intel\Intel(R)

                            Management Engine Components\IPT;C:\Program
Files

                            (x86)\ATI
Technologies\ATI.ACE\Core-Static;C:\Program

                            Files\MiKTeX 2.9\miktex\bin\x64\;C:\Program

                            Files\Git\cmd;C:\Program Files

                            (x86)\Skype\Phone\;C:\Program

                            Files\R\R-3.5.1\bin\x64;C:\Program


Files\RStudio\bin;C:\WINDOWS\System32\OpenSSH\;C:\Program

                            Files (x86)\Calibre2\;C:\Program

                            Files\Intel\WiFi\bin\;C:\Program Files\Common

                            Files\Intel\WirelessCommon\;C:\Users\...
\AppData\Local\Microsoft\WindowsApps

PATHEXT
 .COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC

PROCESSOR_ARCHITECTURE      AMD64

PROCESSOR_IDENTIFIER        Intel64 Family 6 Model 60 Stepping 3,
GenuineIntel

PROCESSOR_LEVEL             6

PROCESSOR_REVISION          3c03

ProgramData                 C:\ProgramData

ProgramFiles                C:\Program Files

ProgramFiles(x86)           C:\Program Files (x86)

ProgramW6432                C:\Program Files

PROJ_LIB                    C:/Program Files/R/R-3.5.1/library/rgdal/proj

PSModulePath
C:\WINDOWS\system32\WindowsPowerShell\v1.0\Modules\

PUBLIC                      C:\Users\Public

R_ARCH                      /x64

R_COMPILED_BY               gcc 4.9.3

R_DOC_DIR                   C:/PROGRA~1/R/R-35~1.1/doc

R_HOME                      C:/PROGRA~1/R/R-35~1.1

R_LIBS_USER                 C:\Program Files\R\R-3.5.1\library

R_MAP_DATA_DIR              C:/Program
Files/R/R-3.5.1/library/maps/mapdata/

R_MAP_DATA_DIR_WORLD        C:/Program
Files/R/R-3.5.1/library/maps/mapdata/

R_USER                      C:/Users/?/Documents

RCRAN                       C:\Program Files\R\R-3.5.1\bin\x64

RMARKDOWN_MATHJAX_PATH      C:/Program Files/RStudio/resources/mathjax-26

RS_LOCAL_PEER               \\.\pipe\30976-rsession

RS_RPOSTBACK_PATH           C:/Program Files/RStudio/bin/rpostback

RS_SHARED_SECRET            63341846741

RSTUDIO                     1

RSTUDIO_CONSOLE_COLOR       256

RSTUDIO_CONSOLE_WIDTH       80

RSTUDIO_MSYS_SSH            C:/Program Files/RStudio/bin/msys-ssh-1000-18

RSTUDIO_PANDOC              C:/Program Files/RStudio/bin/pandoc

RSTUDIO_SESSION_PORT        30976

RSTUDIO_USER_IDENTITY       ?

RSTUDIO_WINUTILS            C:/Program Files/RStudio/bin/winutils

SystemDrive                 C:

SystemRoot                  C:\WINDOWS

TEMP                        C:\Users\...\AppData\Local\Temp

TERM                        xterm-256color

TMP                         C:\Users\...\AppData\Local\Temp

USERDOMAIN                  ?

USERDOMAIN_ROAMINGPROFILE   ?

USERNAME                    ?

USERPROFILE                 C:\Users\...

windir                      C:\WINDOWS

sessionInfo()

R version 3.5.1 (2018-07-02)

Platform: x86_64-w64-mingw32/x64 (64-bit)

Running under: Windows >= 8 x64 (build 9200)



Matrix products: default



locale:

[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
States.1252

[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C


[5] LC_TIME=English_United States.1252



attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods   base



other attached packages:

 [1] dbscan_1.1-2        rgdal_1.3-4         geostatsp_1.7.2
 Matrix_1.2-14

 [5] raster_2.6-7        maptools_0.9-3      maps_3.3.0
spatstat_1.56-1

 [9] rpart_4.1-13        nlme_3.1-137        spatstat.data_1.3-1
rgrass7_0.1-10

[13] XML_3.98-1.16       sp_1.3-1







Thanks in advance,



William
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Sarah Goslee (she/her)
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Thread (3 messages)

Carlos Rodríguez error when trying to use RStudio within GRASS Dec 23 Sarah Goslee error when trying to use RStudio within GRASS Dec 23 Roger Bivand error when trying to use RStudio within GRASS Dec 23