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Spatial prediction map using raster format dataset

Dear All,
My data represent landslides locations and conditioning factors (5000 row, 2000 column, tiff format) ?contain the following:1- Training and testing locations (1=exist, 0= not, also -9999 value refer to no-data areas)2- Independent variables like slope, elevation..etc.
Which type of code do i need to use :1- To read the files, (which format?)2- To run linear regression or any prediction model.
Thank you in advance.

Omar.