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5 messages · Cam Plouffe, Roger Bivand, Massimo Di Stefano

Roger Bivand
# 
All the R lists have become subject to attack by bots automatically 
subscribing (all so far from gmail addresses) and we have not been able to 
match the escalation in this weapons race. We may be obliged to treat all 
non-institutional addresses as suspect (such as gmail, which has been the 
prefered mode for these attackers. We cannot moderate the list, so we may 
need to restrict address sending ranges. I have administratively 
unsubscribed all senders of spam, including you. If you wish to 
re-subscribe (and we don't know that you are not a bot), please do so from 
an institutional address. We may also have to introduce other methods for 
checking the reality of subscribers, which we haven't used until now.

Regretfully,

List admin.
On Sat, 17 Nov 2012, Cam Plouffe wrote:

            

      
      
      
    

        

      
      
    

        

  
    

      
      
    

  


  


      

    

    
8 days later

    

      
      

        


  

        

      Massimo Di Stefano
    

    

      
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Hi All,

i'm having trouble trying to build Rgdal from source on mac osx 10.8.x

i have R and gfortran installed using Homebrew.

when i try to build rgdal i got this log :

epi:~ epi$ R CMD INSTALL rgdal_0.7-22.tar.gz
* installing to library 
?/usr/local/Cellar/r/2.15.2/R.framework/Versions/2.15/Resources/library?
* installing *source* package ?rgdal? ...
** package ?rgdal? successfully unpacked and MD5 sums checked
configure: gdal-config: gdal-config
checking gdal-config usability... yes
configure: GDAL: 1.9.2
checking GDAL version > 1.5.4... yes
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gdal.h usability... yes
checking gdal.h presence... yes
checking for gdal.h... yes
checking gdal: linking with --libs only... no
checking gdal: linking with --libs and --dep-libs... no
clang: warning: treating 'c' input as 'c++' when in C++ mode, this 
behavior is deprecated
gdal_test.c:5:1: error: C++ requires a type specifier for all declarations
main() {
^~~~
1 error generated.
clang: warning: treating 'c' input as 'c++' when in C++ mode, this 
behavior is deprecated
gdal_test.c:5:1: error: C++ requires a type specifier for all declarations
main() {
^~~~
1 error generated.
configure: Install failure: compilation and/or linkage problems.
configure: error: GDALAllRegister not found in libgdal.
ERROR: configuration failed for package ?rgdal?
* removing 
?/usr/local/Cellar/r/2.15.2/R.framework/Versions/2.15/Resources/library/rgdal?
epi:~ epi$


have you any clue about it ?

 > sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-apple-darwin12.2.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats graphics grDevices utils datasets methods base
 >


###


epi:~ epi$ gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/local/Cellar/gfortran/4.7.2/gfortran/libexec/gcc/x86_64-apple-darwin12.2.0/4.7.2/lto-wrapper
Target: x86_64-apple-darwin12.2.0
Configured with: ../configure --enable-languages=fortran 
--prefix=/usr/local/Cellar/gfortran/4.7.2/gfortran 
--datarootdir=/usr/local/Cellar/gfortran/4.7.2/share 
--bindir=/usr/local/Cellar/gfortran/4.7.2/bin --with-system-zlib 
--with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr 
--with-mpc=/usr/local/opt/libmpc --enable-checking=release 
--disable-stage1-checking --disable-build-poststage1-with-cxx 
--disable-libstdcxx-pc --disable-nls
Thread model: posix
gcc version 4.7.2 (GCC)
epi:~ epi$


Thanks!!!

Massimo.

  
  


  


      

    

    

      
      

        


  

        

      Massimo Di Stefano
    

    

      
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I tried to untar the rgdal.tar.gz
and rerun the R cMD install command ,

i attached a link to the logs :

http://epi.whoi.edu/esr/errors.txt
http://epi.whoi.edu/esr/configure.ac
http://epi.whoi.edu/config.log


Il 25/11/12 21:03, Massimo Di Stefano ha scritto: