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rgdal loading problem...
3 messages · Paul Hiemstra, Jonathan Greenberg
The env. variable you need is probably LD_LIBRARY_PATH... cheers, Paul
On 02/08/2012 10:18 PM, Jonathan Greenberg wrote:
R-sig-geo'ers:
I'm trying to get the Eclipse plugin for R ("Stat-et") working, but I've
run into a curious problem with rgdal I was hoping to get some help with.
When loading rgdal from within the remote connection in Eclipse, I get
this error:
require("rgdal")
Loading required package: rgdal Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/apps/oa/lib64/R/library/rgdal/libs/rgdal.so': libgdal.so.1: cannot open shared object file: No such file or directory Other packages work fine via the remote "load", e.g.:
require("raster")
Loading required package: raster raster version 1.9-64 (16-January-2012) Curiously, when launch of R via the command line (connecting to the same server as above via SSH) I get the normal, no-problem load:
require("rgdal")
Loading required package: rgdal Loading required package: sp Geospatial Data Abstraction Library extensions to R successfully loaded Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29 Path to GDAL shared files: /usr/apps/oa/share/gdal Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] Path to PROJ.4 shared files: (autodetected) I suspect something is going on with the environment variables between the Stat-ET launching of R, and the command-line launching. A Sys.getenv() reveals that the environment variables are different, but I'm unclear which variable(s?) I should be looking for to fix this problem (or perhaps it is another issue altogether). Thoughts? Cheers! --j
Paul Hiemstra, Ph.D. Global Climate Division Royal Netherlands Meteorological Institute (KNMI) Wilhelminalaan 10 | 3732 GK | De Bilt | Kamer B 3.39 P.O. Box 201 | 3730 AE | De Bilt tel: +31 30 2206 494 http://intamap.geo.uu.nl/~paul http://nl.linkedin.com/pub/paul-hiemstra/20/30b/770
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