Skip to content

Error gbif function in dismo package

2 messages · Thomas, Evert (Bioversity-Colombia), Olmo

Original
Thomas, Evert (Bioversity-Colombia)
# 
Dear all

I am trying to use the gbif function from dismo package, but there seems to be a problem; this is what I get with the example from the vignette of dismo package...

gbif("solanum", "acaule*", geo=FALSE)

solanum acaule* : 2166 occurrences found
1-1000No such file or directoryfailed to load external entity "http://data.gbif.org/ws/rest/occurrence/list?scientificname=solanum+acaule*&mode=processed&format=darwin&startindex=0&maxresults=1000"
Error : 1: No such file or directory2: failed to load external entity http://data.gbif.org/ws/rest/occurrence/list?scientificname=solanum+acaule*&mode=processed&format=darwin&startindex=0&maxresults=1000

Does anyone have any idea what could be the problem? 

Many thanks in advance!

Evert
Olmo
# 
Hi, what version of R and the dismo package are you running? my info
 is:

R version 3.0.3 (2014-03-06)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=es_ES.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=es_ES.UTF-8        LC_COLLATE=C              
 [5] LC_MONETARY=es_ES.UTF-8    LC_MESSAGES=es_ES.UTF-8   
 [7] LC_PAPER=es_ES.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods
base     

other attached packages:
[1] XML_3.98-1.1  dismo_0.9-3   raster_2.2-31 sp_1.0-14    

loaded via a namespace (and not attached):
[1] grid_3.0.3      lattice_0.20-27 tools_3.0.3 

And it works as expected, I see no error while using the code you
provided. 

 Good luck!

El Sun, 30 Mar 2014 18:10:26 +0000
"Thomas, Evert (Bioversity-Colombia)" <E.Thomas at cgiar.org> escribi?: