CRAN releases of sp, rgdal and rgeos - R-SIG-Geo

Mon, Jun 11, 2018 2:15 AM #

-------- Message original -------- 
Sujet: Re: [R-sig-Geo] CRAN releases of   sp, rgdal and rgeos 
Date: Lundi 11 Juin 2018 08:24 GMT 
De: "Gilles Benjamin Leduc" <gbl1 at hi.is> 
Pour: Roger.Bivand at nhh.no 
 
 
Here it is:

R version 3.4.2 (2017-09-28)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.5

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RColorBrewer_1.1-2 seqinr_3.4-5      

loaded via a namespace (and not attached):
[1] MASS_7.3-50    compiler_3.4.2 tools_3.4.2    ade4_1.7-11 




installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/utf8/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (utf8)
Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
  unknown timezone 'zone/tz/2018c.1.0/zoneinfo/Europe/Helsinki'
* installing *source* package ?rgdal? ...
** package ?rgdal? correctement d?compress? et sommes MD5 v?rifi?es
configure: CC: clang
configure: CXX: clang++
configure: rgdal: 1.3-2
checking for /usr/bin/svnversion... yes
configure: svn revision: 755
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking whether clang++ supports C++11 features by default... no
checking whether clang++ supports C++11 features with -std=gnu++11... yes
configure: C++11 support available
checking for gdal-config... no
no
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ?rgdal?
* removing ?/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rgdal?
* restoring previous ?/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rgdal?

Les packages source t?l?charg?s sont dans
	?/private/var/folders/j0/gxxcvrr13rgg1xwfmf01yb240000gn/T/RtmpUleCF6/downloaded_packages?
Warning message:
In install.packages(update[instlib == l, "Package"], l, repos = repos,  :
  l'installation du package ?rgdal? a eu un statut de sortie non nul


Have a nice Monday

Benjamin  
 
 
Le Lundi 11 Juin 2018 07:53 GMT, Roger Bivand <Roger.Bivand at nhh.no> a ?crit:

On Mon, 11 Jun 2018, Gilles Benjamin Leduc wrote:

Good monday!

I tried to update rgdal, I get a warning telling me the installation had 
a non-null exit status. I haven't cheak if it was working?>

Thanks for responding - every user data point helps!

Could you please provide the output of sessionInfo(), and any error > messages you see on trying to update?

Roger

Benjamin


Le Vendredi 8 Juin 2018 18:15 GMT, Roger Bivand <Roger.Bivand at nhh.no> a ?crit:

There are new releases of sp, rgdal and rgeos on CRAN. Please install sp
first, then the other two, which link to the installed sp. They all

address so-called rchk issues, which have not so far been a problem, but
might have become more fragile as R's internal memory management is made
even more efficient. This involves compiled code using memory allocated by
R to be freed by R's garbage collector, which has to know if an object is
still being used. Tomas Kalibera, the author of rchk, helped resolve and
explain the issues encountered - what was good coding practice fifteen
years ago isn't always still good practice.

In addition, the earliest versions of GDAL and PROJ with which rgdal will
work have been updated, and set to PROJ 4.8.0 and GDAL 1.11.4. The current
released versions of PROJ and GDAL are to be prefered, as bugs have been
fixed and new features and drivers introduced. A check has been put

in place to trap attempts to install rgdal without a C++11-capable> >> compiler when the GDAL version is >=2.3.0 - which requires C++11. rgeos is
ready for the forthcoming version of GEOS.

The CRAN team has also been very supportive of our efforts to bring

compiled code in these packages into rchk compliance.

Please get in touch if you see any loose ends in these releases.

Roger

--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: Roger.Bivand at nhh.no
http://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en

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