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Extracting avg values from smoothed surface in spatstat
2 messages · Graham Smith, Marcelino de la Cruz
Hi,
Probably there is a simpler way, but in the
meantime, you can use this experimental function
"gridim" (of course you can modify as you want).
You have to especify the required "lag" of the
grid (i.e. the desired length of the x-side or
the y-side of each cell in the grid).
It gives you a list of images of the required
size. Then use mean.im to obtain thte mean values.
Example of use:
library(spatstat)
data(longleaf)
Z <- smooth.ppp(longleaf)
plot(Z)
lapply(gridim(Z, xlag=10), mean.im)
Regards,
Marcelino
##### FUNCTION "gridim"#################################################
gridim <- function (miim,xlag,ylag=xlag){
xrange <- miim$xrange
yrange <- miim$yrange
x0 <- xrange[1]
y0 <- yrange[1]
maxx <- round(diff(xrange)/xlag)
maxy <- round(diff(yrange)/ylag)
result <- NULL
z <- 0
for (i in 1:maxx){
for (j in 1:maxy){
z <- z+1
result[z] <-
list(miim[owin(c((x0+xlag)*(i-1),
(x0+xlag)*i),c((y0+ylag)*(j-1), (y0+ylag)*j))])
}
}
class(result) <- c("gridedim", class(result))
return(result)
}
###################################################################################3
At 13:26 25/04/2008, Graham Smith wrote:
I've asked this in the general R list, but it may be better here.
have used smooth.ppp in spatstat to create a smoothed surface plot
based on randomly selected depth measurements across a lake (as marks
in spatstat).
I wonder, if based on the smoothed surface plot, if I can calculate
the average depth for each 10x10 grid square across the lake.
I can't see any obvious way of doing this and would appreciate some
pointers.
Many thanks,
Graham
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________________________________ Marcelino de la Cruz Rot Departamento de Biolog?a Vegetal E.U.T.I. Agr?cola Universidad Polit?cnica de Madrid 28040-Madrid Tel.: 91 336 54 35 Fax: 91 336 56 56 marcelino.delacruz at upm.es