Skip to content

Installation of proj4 v6 on Ubuntu 18.04 Error: proj/epsg not found

6 messages · Edzer Pebesma, Roger Bivand, Tomislav Hengl

Original
Tomislav Hengl
# 
Dear R-sig-geo,

I am trying to install proj4 v6 on Ubuntu 18.04 bionic. I though I can 
install it simply by following the ubuntugis steps 
(https://mothergeo-py.readthedocs.io/en/latest/development/how-to/gdal-ubuntu-pkg.html) 
but this does not lead to newest version of proj4 v6.

Then I have tried to follow the proj6 steps 
(https://proj.org/install.html#install) which indicate that I should do 
it via the Anaconda installer. After I installed proj4 v6 from conda I get:

$ which proj
/home/tomislav/anaconda2/bin/proj

$  proj -V
Rel. 6.2.0, September 1st, 2019
<proj>:
projection initialization failure
cause: no arguments in initialization list
program abnormally terminated

After that I've added the 'PROJ_LIB = /home/tomislav/anaconda2/bin/proj
' to my .Renviron file and then I get:

install.packages("rgdal")
Installing package into ?/home/tomislav/R/x86_64-pc-linux-gnu-library/3.5?
(as ?lib? is unspecified)
...
checking PROJ.4: epsg found and readable... no
Error: proj/epsg not found
Either install missing proj support files, for example
the proj-nad and proj-epsg RPMs on systems using RPMs,
or if installed but not autodetected, set PROJ_LIB to the
correct path, and if need be use the --with-proj-share=
configure argument.
ERROR: configuration failed for package ?rgdal?
* removing ?/home/tomislav/R/x86_64-pc-linux-gnu-library/3.5/rgdal?
Warning in install.packages :
   installation of package ?rgdal? had non-zero exit status

$gdalinfo --version
GDAL 2.4.0, released 2018/12/14

What am I doing wrong? Which tutorial / documentation do you advise to 
install proj4 v6 and rgdal package on Ubuntu?

thank you (especially you Roger!),

T. Hengl
Edzer Pebesma
# 
Hi Tom,

formerly PROJ.4 is now called PROJ.

Have you also tried the usual ubuntu install suggestions we give to
R/ubuntu users, e.g. on https://github.com/r-spatial/sf ?

They are:

sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable
sudo apt-get update
sudo apt-get install libudunits2-dev libgdal-dev libgeos-dev libproj-dev
On 10/28/19 4:34 PM, Tomislav Hengl wrote:

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Tomislav Hengl
    

    

      
      #
    

  


  

      
Thanks Edzer,

I removed my gdal (which removes also all QGIS and everything connect 
unfortunately) then I followed your steps and I get (somehow the proj 
version is still 5 and not 6):

 > install.packages("rgdal")
   % Total    % Received % Xferd  Average Speed   Time    Time     Time 
Current
                                  Dload  Upload   Total   Spent    Left 
Speed
100 1631k  100 1631k    0     0   713k      0  0:00:02  0:00:02 --:--:-- 
  713k
* installing *source* package ?rgdal? ...
** package ?rgdal? successfully unpacked and MD5 sums checked
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgdal: 1.3-3
checking for /usr/bin/svnversion... yes
configure: svn revision: 759
checking whether g++ supports C++11 features by default... yes
configure: C++11 support available
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 2.4.2
checking C++11 support for GDAL >= 2.3.0... yes
checking GDAL version >= 1.11.4... yes
checking gdal: linking with --libs only... yes
checking GDAL: /usr/share/gdal/pcs.csv readable... yes
configure: pkg-config proj exists, will use it
configure: PROJ version: 5.2.0
checking proj_api.h presence and usability... no
configure: error: proj_api.h not found in standard or given locations.
ERROR: configuration failed for package ?rgdal?
* removing ?/opt/microsoft/ropen/3.5.1/lib64/R/library/rgdal?
* restoring previous ?/opt/microsoft/ropen/3.5.1/lib64/R/library/rgdal?

The downloaded source packages are in
	?/data/RTMP/Rtmpl5wj21/downloaded_packages?
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("rgdal") :
   installation of package ?rgdal? had non-zero exit status

what am I doing wrong?

        
On 10/28/19 10:36 PM, Edzer Pebesma wrote:

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        

      
      
    

  
  


  


      

    

    

      
      

        


  

        

      Edzer Pebesma
    

    

      
      #
    

  


  

      
Would you mind giving the ouptut of:

pkg-config proj --libs
pkg-config proj --cflags

and also try:

install.packages("rgdal", repos="http://R-Forge.R-project.org")

        
On 10/29/19 7:11 AM, Tomislav Hengl wrote:

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        

      
      
    

        

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Roger Bivand
    

    

      
      #
    

  


  

      
On Tue, 29 Oct 2019, Edzer Pebesma wrote:

        

            

      
      
      
    

        
Preferably not this, not currently stable. Latest CRAN release was stable.

Roger

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Tomislav Hengl
    

    

      
      #
    

  


  

      
I get:

$ pkg-config proj --libs
-lproj

$ pkg-config proj --cflags

*empty output

        
On 10/29/19 2:01 PM, Edzer Pebesma wrote: