Drawing lines in raster cells

Dear List,

I would like to draw lines in raster cells with a certain values, I can 
work around this with a for loop but as always this solution only works 
for small datasets (which is not my case), I would therefore like to 
have your opinion on this;

#the code
library(maptools) #to use spRbind
out<-NULL
r1<-raster(ncols=10,nrows=10)
r1[]<-sample(0:1,100,replace=TRUE)
for(i in 1:ncell(r1)){
   if(r1[i]==1){
lines<-SpatialLines(list(Lines(list(Line(matrix(c(xyFromCell(r1,i)+(res(r1)/2),xyFromCell(r1,i)-(res(r1)/2)),ncol=2,byrow=TRUE))),ID=as.character(i))))
     if(is.null(out)){
       out<-lines }
        else {out<-spRbind(out,lines)}
     }
   print(i)
}

Thank you in advance,

Hi Lionel,

With this code you will draw lines connecting raster cells with a
certain value. I am not sure if you also need to build a SpatialLines
object with them (which you won't get with my code):

library(raster)
library(latticeExtra) ## to use +.trellis and layer()

r1<-raster(ncols=10,nrows=10)
r1[]<-sample(0:1,100,replace=TRUE)

## extract coordinates of those cells with a condition
myCells <- Which(r1==1, cells=TRUE)
xy <- xyFromCell(r1, myCells)

## border and border.lwd are only needed to highlight the cells boundaries
spplot(r1, at=c(0, 0.5, 1), border='black', border.lwd=0.3) +
     layer(llines(xy, type='b', col='black'))


Best,

Oscar.

Lionel <s6lihert at uni-bonn.de> writes:

Dear List,

I would like to draw lines in raster cells with a certain values, I can
work around this with a for loop but as always this solution only works
for small datasets (which is not my case), I would therefore like to
have your opinion on this;

#the code
library(maptools) #to use spRbind
out<-NULL
r1<-raster(ncols=10,nrows=10)
r1[]<-sample(0:1,100,replace=TRUE)
for(i in 1:ncell(r1)){
    if(r1[i]==1){
lines<-SpatialLines(list(Lines(list(Line(matrix(c(xyFromCell(r1,i)+(res(r1)/2),xyFromCell(r1,i)-(res(r1)/2)),ncol=2,byrow=TRUE))),ID=as.character(i))))
      if(is.null(out)){
        out<-lines }
         else {out<-spRbind(out,lines)}
      }
    print(i)
}

Thank you in advance,

Hi Oscar,

Thanks for your help, what I would like to get is something similar to this:
http://www.google.fr/imgres?q=species+range+shift&start=280&um=1&sa=N&hl=fr&biw=1366&bih=647&tbm=isch&tbnid=MdhZVMKVLMSH3M:&imgrefurl=http://www.scielo.sa.cr/scielo.php%3Fscript%3Dsci_arttext%26pid%3DS0034-77442008000200028&docid=9u3QDKVd0hdQqM&imgurl=http://www.scielo.sa.cr/img/revistas/rbt/v56n2/art28i2.jpg&w=363&h=432&ei=cbiPUe_4BqO80QX-hoCIBw&zoom=1&iact=hc&vpx=588&vpy=170&dur=342&hovh=180&hovw=152&tx=83&ty=124&page=10&tbnh=159&tbnw=134&ndsp=30&ved=1t:429,r:84,s:200,i:256

Where each raster cells with a certain values (say 1) get crossed by a
diagonal line.

Your code is achieving something different, concerning the object created
the best would be a Spatial* object, however I think I could be able to find
a way around using ggmap.

Thanks again,
Lionel


On 12/05/2013 16:23, Oscar Perpi??n Lamigueiro wrote:

Hi Lionel,

With this code you will draw lines connecting raster cells with a
certain value. I am not sure if you also need to build a SpatialLines
object with them (which you won't get with my code):

library(raster)
library(latticeExtra) ## to use +.trellis and layer()

r1<-raster(ncols=10,nrows=10)
r1[]<-sample(0:1,100,replace=TRUE)

## extract coordinates of those cells with a condition
myCells <- Which(r1==1, cells=TRUE)
xy <- xyFromCell(r1, myCells)

## border and border.lwd are only needed to highlight the cells boundaries
spplot(r1, at=c(0, 0.5, 1), border='black', border.lwd=0.3) +
     layer(llines(xy, type='b', col='black'))


Best,

Oscar.

Lionel <s6lihert at uni-bonn.de> writes:

Dear List,

I would like to draw lines in raster cells with a certain values, I can
work around this with a for loop but as always this solution only works
for small datasets (which is not my case), I would therefore like to
have your opinion on this;

#the code
library(maptools) #to use spRbind
out<-NULL
r1<-raster(ncols=10,nrows=10)
r1[]<-sample(0:1,100,replace=TRUE)
for(i in 1:ncell(r1)){
    if(r1[i]==1){

lines<-SpatialLines(list(Lines(list(Line(matrix(c(xyFromCell(r1,i)+(res(r1)/2),xyFromCell(r1,i)-(res(r1)/2)),ncol=2,byrow=TRUE))),ID=as.character(i))))
      if(is.null(out)){
        out<-lines }
         else {out<-spRbind(out,lines)}
      }
    print(i)
}

Thank you in advance,

Lionel, perhaps this is what you are after. Robert

library(raster)
library(rgeos)

r <- raster(ncols=10,nrows=10)
set.seed(0)
r[] <- sample(0:1,100,replace=TRUE)

p <- rasterToPolygons(r, fun=function(x){x==1}, dissolve=TRUE)

plot(r)
plot(p, add=T, density=4)



On Sun, May 12, 2013 at 8:49 AM, Lionel <s6lihert at uni-bonn.de> wrote:

Hi Oscar,

Thanks for your help, what I would like to get is something similar to this:
http://www.google.fr/imgres?q=species+range+shift&start=280&um=1&sa=N&hl=fr&biw=1366&bih=647&tbm=isch&tbnid=MdhZVMKVLMSH3M:&imgrefurl=http://www.scielo.sa.cr/scielo.php%3Fscript%3Dsci_arttext%26pid%3DS0034-77442008000200028&docid=9u3QDKVd0hdQqM&imgurl=http://www.scielo.sa.cr/img/revistas/rbt/v56n2/art28i2.jpg&w=363&h=432&ei=cbiPUe_4BqO80QX-hoCIBw&zoom=1&iact=hc&vpx=588&vpy=170&dur=342&hovh=180&hovw=152&tx=83&ty=124&page=10&tbnh=159&tbnw=134&ndsp=30&ved=1t:429,r:84,s:200,i:256

Where each raster cells with a certain values (say 1) get crossed by a
diagonal line.

Your code is achieving something different, concerning the object created
the best would be a Spatial* object, however I think I could be able to find
a way around using ggmap.

Thanks again,
Lionel


On 12/05/2013 16:23, Oscar Perpi??n Lamigueiro wrote:

Hi Lionel,

With this code you will draw lines connecting raster cells with a
certain value. I am not sure if you also need to build a SpatialLines
object with them (which you won't get with my code):

library(raster)
library(latticeExtra) ## to use +.trellis and layer()

r1<-raster(ncols=10,nrows=10)
r1[]<-sample(0:1,100,replace=TRUE)

## extract coordinates of those cells with a condition
myCells <- Which(r1==1, cells=TRUE)
xy <- xyFromCell(r1, myCells)

## border and border.lwd are only needed to highlight the cells boundaries
spplot(r1, at=c(0, 0.5, 1), border='black', border.lwd=0.3) +
      layer(llines(xy, type='b', col='black'))


Best,

Oscar.

Lionel <s6lihert at uni-bonn.de> writes:

Dear List,

I would like to draw lines in raster cells with a certain values, I can
work around this with a for loop but as always this solution only works
for small datasets (which is not my case), I would therefore like to
have your opinion on this;

#the code
library(maptools) #to use spRbind
out<-NULL
r1<-raster(ncols=10,nrows=10)
r1[]<-sample(0:1,100,replace=TRUE)
for(i in 1:ncell(r1)){
     if(r1[i]==1){

lines<-SpatialLines(list(Lines(list(Line(matrix(c(xyFromCell(r1,i)+(res(r1)/2),xyFromCell(r1,i)-(res(r1)/2)),ncol=2,byrow=TRUE))),ID=as.character(i))))
       if(is.null(out)){
         out<-lines }
          else {out<-spRbind(out,lines)}
       }
     print(i)
}

Thank you in advance,