Also make sure you have the latest R.app 2.14.0 for Mac because there was an issue when installing packages from the R.app (in case you where using this). Please see:
http://www.mail-archive.com/r-sig-mac at r-project.org/msg00840.html
On 29/11/2011, at 8:55 PM, Molly Davies wrote:
Hello,
I am unable to get gstat to load using R version 2.14.0 (2011-10-31) on platform x86_64-apple-darwin9.8.0/x86_64 (64 bit). The package was working before I updated my R version.
When I tried to load gstat before i had updated it, I got the following error message. (I include this in case there are clues that might indicate the source of my problem).
Loading required package: spacetime
Loading required package: xts
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/gstat/libs/x86_64/gstat.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/gstat/libs/x86_64/gstat.so, 6): Library not loaded: @rpath/R.framework/Versions/2.13/Resources/lib/libR.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/2.14/Resources/library/gstat/libs/x86_64/gstat.so
Reason: image not found
In addition: Warning messages:
1: replacing previous import ?is.projected? when loading ?spacetime?
2: replacing previous import ?proj4string? when loading ?spacetime?
3: replacing previous import ?proj4string<-? when loading ?spacetime?
Error: package/namespace load failed for ?gstat?
I assumed this meant I needed to update/reinstall gstat, which I did from the GUI.
install.packages("gstat")
trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.14/gstat_1.0-10.tgz'
Content type 'application/x-gzip' length 2888795 bytes (2.8 Mb)
opened URL
==================================================
downloaded 2.8 Mb
The downloaded packages are in
/var/folders/wB/wB-s9onCFfSt45x+FPq9rE+++TI/-Tmp-//Rtmpyy3Pnp/downloaded_packages
Then when I tried to load the library again, I got the following:
Error in get(Info[i, 1], envir = env) :
internal error -3 in R_decompress1
Error: package/namespace load failed for ?gstat?
I've never seen this error before.
Following the suggestions from a message on R-sig-ME regarding the library lme4a:
https://stat.ethz.ch/pipermail/r-sig-mixed-models/2011q3/006399.html
(I think it's irrelevant here, but I have Xcode installed.)
1. I tried installing the package from R-forge (maybe this would be better?)
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package ?gstat? is not available (for R version 2.14.0)
2. I downloaded the "gstat" packages directly from CRAN and installed from the command line:
Molly$ R CMD INSTALL /Users/Molly/Downloads/gstat_1.0-10.tgz
* installing to library ?/Library/Frameworks/R.framework/Versions/2.14/Resources/library?
* installing *binary* package ?gstat? ...
* DONE (gstat)
Still no luck. Does anyone have any advice for me as far as how to proceed? I apologize in advance if my problem has already been addressed and I failed to find it in the list archives. If this is the case, I would very much appreciate it if someone could send me a link.
Thanks for your time,
Molly Davies