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[R--gR] deal: genlatex fails

6 messages · Claus Dethlefsen, Sam Steingold

Original
Sam Steingold
# 
I get this:
Error in if (x == 1) return("\\footnotesize{$1$}") : 
	argument is of length zero


search is returned by autosearch.
the same error with the return value of heuristic.

pic/scoretable.tex:
----------------------------------------------------------------
%% generated automatically Tue Mar 21 14:05:50 2006 - Don't edit by hand
%% A master file:
%% documentclass{article}
%% usepackage{array,pictex}
%% egin{document}
%% input{scoretable}
%% end{document}
\begin{tabular}{|m{2.4cm}|m{2.4cm}|m{2.4cm}|m{2.4cm}|m{2.4cm}|}\hline
\vspace{-0.9cm}\begin{minipage}[t]{2.4cm}
\input{pic1.tex}
\vspace{-1.8cm}\footnotesize{$ 380.0  $}\\
\footnotesize{$1$}
\end{minipage}
&
----------------------------------------------------------------

note "^H" instead of "b" above.

other questions:

--- is there a way to _prescribe_ arrows (the inverse of banlist)?
    I do not want to use the gui (drawnetwork), I want something more
    command-line oriented.

--- how do I print a network to the printer?
    all I can see now is plot() + print screen.

Thanks!
Sam Steingold
# 
also,
Generating pic-files...Error in plot.window(xlim, ylim, log, asp, ...) : 
	need finite 'xlim' values
In addition: Warning messages:
1: 'pic' already exists 
2: NAs introduced by coercion 
3: no finite arguments to min; returning Inf 
4: no finite arguments to max; returning -Inf 
5: parameter "cexscale" could not be set in high-level plot() function 
6: parameter "arrowlength" could not be set in high-level plot() function 
7: parameter "notext" could not be set in high-level plot() function

  
    

      
      
    

  


  


      

    

    
3 days later

    

      
      

        


  

        

      Claus Dethlefsen
    

    

      
      #
    

  


  

      
Dear Sam
 
genlatex needs an object of class "networklist" as input, which will then be arranged nicely in a table in latex code, where the networks are stored in pictex format. You are inputting a single network, which is not handled by genlatex.
 
The search (heuristic/auto) also returns a table of strings representing all the networks that have been "visited" in the search. The function 'makenw' can take this table and re-create the networks as a networklist, which can then be sorted (according to score) and used as input to genlatex/genpicfile.
 
You probably want to do something along the lines:
 
library(deal)
data(ksl)
ksl.nw  <- network(ksl)
ksl.prior <- jointprior(ksl.nw,64)
mybanlist <- matrix(c(5,5,6,6,7,7,9,
                    8,9,8,9,8,9,8),ncol=2)
banlist(ksl.nw) <- mybanlist                  
ksl.nw <- getnetwork(learn(ksl.nw,ksl,ksl.prior))
ksl.search <- autosearch(ksl.nw,ksl,ksl.prior,
                      trace=TRUE)
ksl.searchlist <- makenw(ksl.search$table,ksl.search$nw)
ksl.searchlist <- nwfsort(ksl.searchlist)
genpicfile(ksl.searchlist)
genlatex(ksl.searchlist)

 
- There is no way to 'glue' arrows into the network (opposite of 'ban').
 
- To print networks, consider using the R devices pdf() or postscript() which will created files with the networks displayed in the graphics window. The files can then be printed.
 
Best,
Claus
 
________________________________
Claus Dethlefsen, Msc, PhD
Statistiker ved Kardiovaskul?rt Forskningscenter

 
Forskningens Hus
Aalborg Sygehus 
Sdr. Skovvej 15
9000 Aalborg

Tlf:   9932 6863
email: aas.claus.dethlefsen at nja.dk <mailto:aas.claus.dethlefsen at nja.dk> 

________________________________

Fra: r-sig-gr-bounces at stat.math.ethz.ch p? vegne af Sam Steingold
Sendt: ti 21-03-2006 20:13
Til: r-sig-gr at stat.math.ethz.ch
Emne: [R--gR] deal: genlatex fails



I get this:

            

      
      
      
    

        
Error in if (x == 1) return("\\footnotesize{$1$}") :
        argument is of length zero


search is returned by autosearch.
the same error with the return value of heuristic.

pic/scoretable.tex:
----------------------------------------------------------------
%% generated automatically Tue Mar 21 14:05:50 2006 - Don't edit by hand
%% A master file:
%% documentclass{article}
%% usepackage{array,pictex}
%% egin{document}
%% input{scoretable}
%% end{document}
\begin{tabular}{|m{2.4cm}|m{2.4cm}|m{2.4cm}|m{2.4cm}|m{2.4cm}|}\hline
\vspace{-0.9cm}\begin{minipage}[t]{2.4cm}
\input{pic1.tex}
\vspace{-1.8cm}\footnotesize{$ 380.0  $}\\
\footnotesize{$1$}
\end{minipage}
&
----------------------------------------------------------------

note "^H" instead of "b" above.

other questions:

--- is there a way to _prescribe_ arrows (the inverse of banlist)?
    I do not want to use the gui (drawnetwork), I want something more
    command-line oriented.

--- how do I print a network to the printer?
    all I can see now is plot() + print screen.

Thanks!

--
Sam Steingold (http://www.podval.org/~sds) on Fedora Core release 4 (Stentz)
http://www.honestreporting.com http://www.openvotingconsortium.org
http://truepeace.org http://www.camera.org http://www.jihadwatch.org
Daddy, what does "format disk c: complete" mean?

_______________________________________________
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https://stat.ethz.ch/mailman/listinfo/r-sig-gr

  
  


  


      

    

    
2 days later

    

      
      

        


  

        

      Sam Steingold
    

    

      
      #
    

  


  

      
Dear Claus,

            

      
      
      
    

        
I see, thanks for your help!

            

      
      
      
    

        
yes, it works, thanks!

it would be nice if a master.tex file were also generated that included
the table, nice and all the other networks too - for easy viewing.

            

      
      
      
    

        
please consider this feature to have been requested.

            

      
      
      
    

        
this is probably due to a spurious backslash in a literal string:
"\begin" == "^Hegin".

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Sam Steingold
    

    

      
      #
    

  


  

          

      
      
      
    

        
oops - I did not notice that scoretable.tex actually does contain the list.
unfortunately, I get the dreaded "TeX capacity exceeded" error:

(./pic28.tex)
Overfull \hbox (47.34357pt too wide) in paragraph at lines 171--176
[]|[]| 
(./pic29.tex)
Overfull \hbox (47.34357pt too wide) in paragraph at lines 177--182
[]|[]| 
(./pic30.tex)
Overfull \hbox (47.34357pt too wide) in paragraph at lines 183--188
[]|[]| 
(./pic31.tex)
Overfull \hbox (47.34357pt too wide) in paragraph at lines 189--194
[]|[]| 
(./pic32.tex)
Overfull \hbox (47.34357pt too wide) in paragraph at lines 195--200
[]|[]| 
(./pic33.tex
! TeX capacity exceeded, sorry [main memory size=1000000].
\!plot ...menA \raise \!dimenB \copy \!plotsymbol 
                                                  \kern -\!dimenA \ignorespa...
l.35 \plot 67.79 84.12 43.31 76.41 
                                   /
No pages of output.
Transcript written on master.log.


--
Sam Steingold (http://www.podval.org/~sds) on Fedora Core release 4 (Stentz)
http://www.memri.org http://www.savegushkatif.org http://ffii.org
http://pmw.org.il http://truepeace.org http://www.mideasttruth.com
There are 3 kinds of people: those who can count and those who cannot.

  
  


  


      

    

    

      
      

        


  

        

      Sam Steingold
    

    

      
      #
    

  


  

          

      
      
      
    

        
and when I trim the list of "pic" files, I get this further error:

(./pic30.tex)
Overfull \hbox (47.34357pt too wide) in paragraph at lines 183--188
[]|[]| 

Overfull \hbox (45.83215pt too wide) in paragraph at lines 8--189
[][] 
[1]) (./picnice.tex
! Missing $ inserted.
<inserted text> 
                $
l.15 ...ate}  [lB] <0.00pt,0.00pt> at 174.63 83.31
                                                  
! Extra }, or forgotten $.
\!setputobject ...>\setbox \!putobject =\hbox {#1}
                                                  \!ht =\ht \!putobject \!dp...
l.15 ...ate}  [lB] <0.00pt,0.00pt> at 174.63 83.31
                                                  
! Missing $ inserted.
<inserted text> 
                $
l.17 ...te}  [lB] <0.00pt,0.00pt> at 242.09 158.45
                                                  
! Extra }, or forgotten $.
\!setputobject ...>\setbox \!putobject =\hbox {#1}
                                                  \!ht =\ht \!putobject \!dp...
l.17 ...te}  [lB] <0.00pt,0.00pt> at 242.09 158.45
                                                  
! Extra }, or forgotten $.
\endpicture ...bot \global \!Ytop =\!ytop \egroup 
                                                  \ht \!picbox =\!Ytop \dp \...
l.157 \endpicture
                 
! Extra }, or forgotten $.
l.158 }
       
)
! Missing $ inserted.
<inserted text> 
                $
l.7 \end{document}
                  
! Missing } inserted.
<inserted text> 
                }
l.7 \end{document}
                  
! Missing $ inserted.
<inserted text> 
                $
l.7 \end{document}
                  
! Missing } inserted.
<inserted text> 
                }
l.7 \end{document}
                  
! Missing } inserted.
<inserted text> 
                }
l.7 \end{document}
                  
! Missing } inserted.
<inserted text> 
                }
l.7 \end{document}
                  
! Missing $ inserted.
<inserted text> 
                $
l.7 \end{document}
                  
! Display math should end with $$.
<to be read again> 
                   \vfil 
l.7 \end{document}
                  
[2] (./master.aux) )
(see the transcript file for additional information)
Output written on master.dvi (2 pages, 710520 bytes).
Transcript written on master.log.