Message-ID: <28FDFAB2-7561-42D5-82EE-F66C21BB41D6@web.de>
Date: 2010-12-19T08:54:08Z
From: Marius Hofert
Subject: Error in makeMPIcluster(spec, ...): how to get a minimal example for parallel computing with doSNOW to run?
Dear all,
I received the following feedback from the maintainers of the cluster "Brutus".
## begin quotation
All MPI processes are launched by mpirun when your job starts. Rmpi simply queries
those processes to find out their number and ranks. In other words, the R
"cluster" is already up and running when Rmpi (or doMPI, doSNOW) starts. That is
the reason you cannot spawn slaves or create a new cluster using
mpi.spawn.Rslaves(), startMPIcluster() or makeCluster().
The proof is that the "hello world" example runs without error on Brutus if you
remove the mpi.spawn.Rslaves() statement.
I believe the problem in the present case is that registerDoMPI(cl) and
registerDoSNOW(cl) require a "cluster" (cl) as argument. Unlike Rmpi, they are
unable to use the pre-existing (and unnamed) cluster started by mpirun.