mpi_comm_spawn error with Rmpi and snow on SGI Altix
Hi, Gad.
I added -up to the script called by qsub:
qsub is OpenPBS?
#!/bin/sh #$ -cwd #$ -pe mpi 2 mpirun -up 2 -np 1 /home/gabraham/bin/R --vanilla < testsnow.R
does as follows maybe if it is OpenPBS. #!/bin/bash #PBS -N testsnow #PBS -q <<Name of queue that you of your machine can use>> #PBS -l ncpus=3 #PBS -o testsnow.out #PBS -e testsnow.err mpirun -up 2 -np 1 /home/gabraham/bin/R CMD BATCH --vanilla testsnow.R try `man qsub'.
but I still get the same error:
cat testsnow.sh.e394520
Error calling job_getjid(): No such file or directory Error in mpi.comm.spawn(slave = mpitask, slavearg = args, nslaves = count, : Error during spawn request Calls: makeCluster ... switch -> makeMPIcluster -> mpi.comm.spawn -> .Call Execution halted MPI: MPI_COMM_WORLD rank 0 has terminated without calling MPI_Finalize() MPI: aborting job
EI-JI Nakama <nakama (a) ki.rim.or.jp> "\u4e2d\u9593\u6804\u6cbb" <nakama (a) ki.rim.or.jp>