snow, socket cluster: problem with path to rscript
On 15 April 2009 at 17:29, Matthieu Stigler wrote:
| >> So it is now working for the local computer with. However, when trying to | >> use the external computer, it seems to be working but nothing happens after | >> he asked for the last password... | >> | > | > This tells you is that "something went wrong". The basic strategy in this case | > is to use the "outfile" option to hopefully capture an error message. You might | > need to set outfile differently for different slaves, particularly if | > you're starting | > more than one on the same machine, but I suggest just starting one slave | > on 210 to avoid the issue. So do something like: | > | > | >> host210 <- list(host = "mat at 192.100.100.210", rscript = "/usr/bin/Rscript", | >> | > + outfile="/tmp/log.txt") | > | >> cl2 <- makeCluster(list(host210), type = "SOCK") | >> | > | > | Ok, thanks for pointing out this methid. | | I tried it and got following error message. This does not seem not be | computer specific (tried to do it to other host 213, and from other host | 213 to 212, always same error message): | | starting worker for ubuntu:10187 | | Error in socketConnection(master, port = port, blocking = TRUE, open = "a+b") : | | unable to open connection | | Calls: local ... slaveLoop -> recvData -> makeSOCKmaster -> socketConnection | | In addition: Warning message: | | In socketConnection(master, port = port, blocking = TRUE, open = "a+b") : | | ubuntu:10187 cannot be opened | | Execution halted | | | Is it related to ssh or snow? I did not find any reference to that prob | googling for it... Test for it --- can you actually issue an ssh command for the _script_ on the _machine_ you have specified ? I.e. run $ ssh mat at 192.100.100.210 /usr/bin/Rscript --version where I added --version to make sure Rscript has something to do. Unless this works 'by itself', you cannot expect to use it. Dirk
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