Sun Grid Engine (SGE) and Rsge package
Hi, we have a cluster with SGE, R, LAM/MPI, Rmpi and snow. And it is working fine. But configuration of SGE was a long and stressful job. I had a look to the Rsge job. I think first of all you need a working SGE with MPI and R. The package will not help you to configure your SGE. Best Markus
Rainer M Krug wrote:
Hi I just found the Rsge package which seems to suit my need to do parallel processing on a cluster with SGE. I did not manage to use Rmpi or snow (which would have been nice). My only problem is, that I can't find any documentation on how to use Rsge (apart from the one included in the source package) - it seems to utilise several options which might be useful to set. Does anybody has any experience with this package or can show me a way of using snow or Rmpi in an environment where I have to use SGE (qsub ...)? Thanks Rainer
Dipl.-Tech. Math. Markus Schmidberger Ludwig-Maximilians-Universit?t M?nchen IBE - Institut f?r medizinische Informationsverarbeitung, Biometrie und Epidemiologie Marchioninistr. 15, D-81377 Muenchen URL: http://www.ibe.med.uni-muenchen.de Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de Tel: +49 (089) 7095 - 4599