Message-ID: <493974DD.6010905@ibe.med.uni-muenchen.de>
Date: 2008-12-05T18:37:17Z
From: Markus Schmidberger
Subject: Sun Grid Engine (SGE) and Rsge package
In-Reply-To: <fb7c7e870812042249r22d896f7u2b9196232509112c@mail.gmail.com>
Hi,
we have a cluster with SGE, R, LAM/MPI, Rmpi and snow. And it is working
fine. But configuration of SGE was a long and stressful job.
I had a look to the Rsge job. I think first of all you need a working
SGE with MPI and R. The package will not help you to configure your SGE.
Best
Markus
Rainer M Krug wrote:
> Hi
>
> I just found the Rsge package which seems to suit my need to do
> parallel processing on a cluster with SGE. I did not manage to use
> Rmpi or snow (which would have been nice).
>
> My only problem is, that I can't find any documentation on how to use
> Rsge (apart from the one included in the source package) - it seems to
> utilise several options which might be useful to set.
> Does anybody has any experience with this package or can show me a way
> of using snow or Rmpi in an environment where I have to use SGE (qsub
> ...)?
>
> Thanks
>
> Rainer
>
--
Dipl.-Tech. Math. Markus Schmidberger
Ludwig-Maximilians-Universit?t M?nchen
IBE - Institut f?r medizinische Informationsverarbeitung,
Biometrie und Epidemiologie
Marchioninistr. 15, D-81377 Muenchen
URL: http://www.ibe.med.uni-muenchen.de
Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de
Tel: +49 (089) 7095 - 4599