serialize() slow
In this post: http://www.mail-archive.com/r-devel at r-project.org/msg13248.html Henrik Bengtsson observes that the R function serialize() can run very slowly when the argument connection is null and provides a function serialize2() that runs much faster. The post is dated 7/24/2008. Some code I wrote using package Rmpi was running slowly and I found out the bottleneck was exactly the function serialize(), which is called by some functions in Rmpi. So I inserted the command serialize <- serialize2 in my code and there was a dramatic acceleration of the relevant portions of the program. I have run the same code on two other computers and it did not run slowly. To be more specific: In all three computers I am running R 2.11.1. All three computers are made by HP. One dual core desktop PC (with no hyperthreading) running Windows XP 32-bit and one Intel i5 notebook (dual core with hyperthreading) running Windows 7 64-bit are not slowed down by serialize(). One dual core notebook (no hyperthreading) running Windows 7 64-bit executes serialize() very slowly. I used the function memory.limit() to increase memory allocation but that did not make any difference. Of course substituting serialize2 for serialize() is not an ideal situation, among other reasons because serialize2() needlessly writes to and reads from a connection (a temporary file). Does anyone have insights on what is going on and maybe better ways to deal with the issue? Thanks. Fernando Saldanha