library 'quadmath' not found
On 23/05/2024 16:00, Petar Milin wrote:
I have recently updated my R (4.4.0) and all the packages running on Sonoma (14.5) with Intel. When I try to install from GitHub with:
install_github("zdk123/SpiecEasi")
I get the error message:
ld: warning: search path '/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0' not found
ld: warning: search path '/opt/gfortran/lib' not found
^^^^ is the important message.
ld: library 'quadmath' not found clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [SpiecEasi.so] Error 1 ERROR: compilation failed for package ?SpiecEasi? I did xcode-select ?install but that was done already. I also installed gfortran-4.2.3.pkg but that did not help either.
Please remove it via pkgutils: it is way too old.
Can anyone advise, please?
Please read the R-admin manual. To install a package using Fortran from sources you need to install https://mac.r-project.org/tools/gfortran-12.2-universal.pkg, also indicated via the tools page linked from https://cran.r-project.org/bin/macosx/
Brian D. Ripley, ripley at stats.ox.ac.uk Emeritus Professor of Applied Statistics, University of Oxford