Message-ID: <93AE6D04-32B0-11D9-BC45-000A95C87F66@unimi.it>
Date: 2004-11-10T01:36:44Z
From: stefano iacus
Subject: Installing hexbin package (bioconductor)
In-Reply-To: <f8e6ff05041109115370d6af8f@mail.gmail.com>
The problem with source compiling is because of wrong versiong of g77.
Please read the Mac OS X Faq to get the latest and correct version of
g77.
As for hexbin: it builds fine with this release of R for Mac OS X and
related GUI (which I remember is just a wrapper around command line
R).
the other question is about 2.0 binaries for BioC. There was a wrong
link to 1.9 packages instead of 2.0 packages in the macosx page on BioC
(it was my fault as usual).
It is now fixed, so the package installer of R.app should now be able
to get the correct version.
stefano
On Nov 9, 2004, at 8:53 PM, hadley wickham wrote:
> Has anyone had any luck installing the hexbin package from
> bioconductor?
>
> Using gui and installing from binaries: library(hexbin) gives "Error
> in library(hexbin) : 'hexbin' is not a valid package -- installed <
> 2.0.0?"
>
> Using gui and installing from source: gives "make: g77: Command not
> found" (and I do have g77)
>
> Using command line and R CMD install: "
> * Installing *source* package 'hexbin' ...
> ** libs
> g77 -fno-common -g -O2 -c hbin.f -o hbin.o
> g77 -fno-common -g -O2 -c hcell.f -o hcell.o
> g77 -fno-common -g -O2 -c herode.f -o herode.o
> g77 -fno-common -g -O2 -c hsm.f -o hsm.ogcc -bundle -flat_namespace
> -undefined suppress -L/usr/local/lib -o hexbin.so hbin.o hcell.o
> herode.o hsm.o -L/usr/local/lib
> -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2
> -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -lfrtbegin
> -lg2c -lSystem -lcc_dynamic -framework R
> ld: warning -L: directory name
> (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2) does not exist
> ld: warning -L: directory name
> (/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../..) does not
> exist
> ld: can't locate file for: -lfrtbegin"
>
> Any suggestions?
>
> Thanks,
>
> Hadley
>
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