Bus error while updating packages
I think I have traced the bug. It's fixed in 2.6.2 patched, but also just in time for the Mac 2.6.2 CRAN binary released today. Cheers, Simon
On Feb 7, 2008, at 9:58 PM, Michael Kubovy wrote:
Can anyone suggest what I may be doing wrong? I had issued the command update.packages(), after which I went through the usual dialog: mixtools : Version 0.2.0 installed in /Library/Frameworks/R.framework/Resources/ library Version 0.3.0 available at http://lib.stat.cmu.edu/R/CRAN Update (y/N/c)? y ? tsDyn : Version 0.5-7 installed in /Library/Frameworks/R.framework/Resources/ library Version 0.6-0 available at http://lib.stat.cmu.edu/R/CRAN Update (y/N/c)? y trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/universal/contrib/2.6/mixtools_0.3.0.tgz' Content type 'application/x-gzip' length 325712 bytes (318 Kb) opened URL ================================================== downloaded 318 Kb ? trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/universal/contrib/2.6/tsDyn_0.6-0.tgz' Content type 'application/x-gzip' length 519954 bytes (507 Kb) opened URL ================================================== downloaded 507 Kb *** caught bus error *** address 0x20, cause 'non-existent physical address' Traceback: 1: unlink(instPath, recursive = TRUE) 2: unpackPkg(foundpkgs[okp, 2], foundpkgs[okp, 1], lib, installWithVers) 3: .install.macbinary(pkgs = pkgs, lib = lib, contriburl = contriburl, method = method, available = available, destdir = destdir, installWithVers = installWithVers, dependencies = dependencies) 4: install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, method = method, available = available, ..., type = type) 5: update.packages() I am running R version 2.6.1 (2007-11-26) i386-apple-darwin8.10.1 locale: en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
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