On 20/05/2021, at 10:27 AM, Renato Morais <renatomoraisaraujo at gmail.com> wrote:
Hi Simon,
I'm happy to, I'm just not sure how to check previous logs...
On another note, and I'm sure this is a problem with the compiler, now that my packages are installed, the ones I had to compile from the source cannot be loaded.
Error: package or namespace load failed for ?nlme? in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nlme/libs/nlme.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nlme/libs/nlme.so, 6): Library not loaded: /opt/R/arm64/gfortran/lib/libgfortran.5.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nlme/libs/nlme.so
Reason: image not found
Any insights on how that could be solved?
Thanks again for your help,
Renato
On Thu, 20 May 2021 at 07:00, Simon Urbanek <simon.urbanek at r-project.org> wrote:
Renato,
I'm glad you have work-around, but I'd still like to get to the core of the issue, we don't want R to crash ;).
Can you, please, check your Console log to see if there is a trace of the crash and if so, send it to me?
Also are you using R in the Terminal or the R.app GUI?
Thanks,
Simon
On 20/05/2021, at 12:07 AM, Renato Morais <renatomoraisaraujo at gmail.com> wrote:
Thanks Jeroen, fixing the repo connected me with CRAN (it was defaulted to
'@CRAN@' I think)!
Cheers,
Renato
On Wed, 19 May 2021 at 21:00, Jeroen Ooms <jeroen at berkeley.edu> wrote:
On Wed, May 19, 2021 at 11:34 AM Renato Morais
<renatomoraisaraujo at gmail.com> wrote:
Hi all,
I'm new here, so please forgive my clumsy error reporting.
I have just downloaded *R-4.1-branch.pkg* for my Mac M1, as I wanted to
finally enjoy a native normal-speed R (for some reason running v 4.0.5 on
Rosetta was extremely slow on my machine). I also installed the latest
XQuartz, as indicated (v 2.8.1).
Sad story is, when I try a simple install.packages command, it first
appears to ignore me, after returning 'Please select a CRAN mirror for
in this session'. if I insist, it crashes. No useful error messages.
via the Package Installer tab didn't work either. It doesn't find any
packages, indeed it crashes if I ask it to load the list.
This indeed sounds like an xQuartz issue, failing to popup the mirror
selection menu. Does everything work if you manually set your CRAN
mirror first, e.g:
options(repos=c(CRAN="https://cloud.r-project.org"))
Alternatively you can disable the popup menus all-together using:
options(menu.graphics=FALSE)
Which should probably be the default.
--
*Renato Morais | **ARC Postdoctoral Research Associate*
Research Hub for Coral Reef Ecosystem Functions
College of Science and Engineering
ARC Centre of Excellence for Coral Reef Studies
James Cook University
Townsville, Queensland, Australia
https://www.reeffunctionhub.org
http://thebellwoodreeffishlab.com
--
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