RMySQL and '_fprintf$LDBLStub' symbol not found
Paul, can you, please, supply us with some critical details such as how you installed and/or compiled RMySQL and whether you have a custom or CRAN version of R? Thanks, Simon
On Dec 3, 2005, at 5:14 PM, Paul Shannon wrote:
Hi all,
From a goggle search, it appears this problem is not unknown, and may be
due to compiler version differences (gcc 3.3 and 4.0). But whatever the cause, and despite the remedies I tried (mostly 'sudo gcc_select 3.3') I could not get RMySQL to load. Here's the error message:
library (RMySQL)
Loading required package: DBI
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/Library/Frameworks/
R.framework/Resources/library/RMySQL/libs/RMySQL.so':
dlopen(/Library/Frameworks/R.framework/Resources/library/RMySQL/
libs/RMySQL.so, 6): Symbol not found: _fprintf$LDBLStub
Referenced from: /Library/Frameworks/R.framework/Resources/
library/RMySQL/libs/RMySQL.so
Expected in: flat namespace
Error in library(RMySQL) : .First.lib failed for 'RMySQL'
This is using:
Mac OS 10.4.3
R version 2.1.1.
mysql 5.0.1
DBI 0.1-9
RMySQL 0.5-5
Any suggestions?
Thanks!
- Paul Shannon
Institute for Systems Biology
Seattle
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