R crash in Terminal.app
It looks like I forgot to reply to the list when responding to Simon's comment. Sorry about that. In any case it seems like the problem is specific to me. Thanks for taking the time to look into this. Kjell My reply to Simon's comment: I am running OS X 10.6.4 and using the CRAN binary of R 2.11.1, downloaded and installed today. I think the problem might be related to the default for the DISPLAY variable when you run a shell in Terminal.app. If I either unset DISPLAY or set it to :0 I do not get the crash. If I leave the default value (which somehow starts X11.app if it's not already running), something like /tmp/launch-1XKdV7/org.x:0 then I get the crash described below.
On 27 ao?t 2010, at 19:54, Steven McKinney wrote:
It works alright for me from Terminal.app - could this be a tcl/tk issue for you? $ R R version 2.11.1 (2010-05-31) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
plot(1:10, 1:10) dev.off()
null device
1
install.packages("car")
--- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://cran.stat.sfu.ca/bin/macosx/leopard/contrib/2.11/car_2.0-2.tgz' Content type 'application/x-gzip' length 768891 bytes (750 Kb) opened URL ================================================== downloaded 750 Kb The downloaded packages are in /var/folders/-I/-IwfookDG3Wu7O0-CiOMZE+++TI/-Tmp-//RtmpZ3NPdN/downloaded_packages
sessionInfo()
R version 2.11.1 (2010-05-31) x86_64-apple-darwin9.8.0 locale: [1] en_CA.UTF-8/en_CA.UTF-8/C/C/en_CA.UTF-8/en_CA.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tcltk_2.11.1 tools_2.11.1
Sys.getlocale()
[1] "en_CA.UTF-8/en_CA.UTF-8/C/C/en_CA.UTF-8/en_CA.UTF-8"
Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre
________________________________________
From: r-sig-mac-bounces at stat.math.ethz.ch [r-sig-mac-bounces at stat.math.ethz.ch] On Behalf Of Konis Kjell [kjell.konis at epfl.ch]
Sent: August 27, 2010 6:27 AM
To: r-sig-mac at stat.math.ethz.ch
Subject: [R-SIG-Mac] R crash in Terminal.app
Hello,
I am able to consistenly crash R (both 32 and 64 bit) with the following three commands
plot(1:10, 1:10)
dev.off()
install.packages("car")
when I run R in Terminal.app.
Kjell
Warning in install.packages("car") :
argument 'lib' is missing: using '/u/smat/konis/Library/R/2.11/library'
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... 2010-08-27 15:16:54.628 R[3407:60f] -[NSApplication _setup:]: unrecognized selector sent to instance 0x100559f40
2010-08-27 15:16:54.631 R[3407:60f] An uncaught exception was raised
2010-08-27 15:16:54.632 R[3407:60f] -[NSApplication _setup:]: unrecognized selector sent to instance 0x100559f40
2010-08-27 15:16:54.674 R[3407:60f] *** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason: '-[NSApplication _setup:]: unrecognized selector sent to instance 0x100559f40'
*** Call stack at first throw:
(
0 CoreFoundation 0x00007fff874ddcc4 __exceptionPreprocess + 180
1 libobjc.A.dylib 0x00007fff8502d0f3 objc_exception_throw + 45
2 CoreFoundation 0x00007fff87537140 +[NSObject(NSObject) doesNotRecognizeSelector:] + 0
3 CoreFoundation 0x00007fff874afcdf ___forwarding___ + 751
4 CoreFoundation 0x00007fff874abe28 _CF_forwarding_prep_0 + 232
5 libtk8.5.dylib 0x0000000116a08ecb TkpInit + 530
6 libtk8.5.dylib 0x0000000116980cae Tk_PkgInitStubsCheck + 1938
7 tcltk.so 0x0000000116850fce tcltk_init + 62
8 libR.dylib 0x0000000100072f32 do_dotCode + 6226
9 libR.dylib 0x000000010009dbfc Rf_eval + 1676
10 libR.dylib 0x000000010009e48b Rf_DispatchOrEval + 763
11 libR.dylib 0x0000000100165702 do_subset2 + 66
12 libR.dylib 0x000000010009da1c Rf_eval + 1196
13 libR.dylib 0x000000010009dfbc Rf_evalList + 92
14 libR.dylib 0x000000010009dac7 Rf_eval + 1367
15 libR.dylib 0x000000010009f9eb do_set + 603
16 libR.dylib 0x000000010009da1c Rf_eval + 1196
17 libR.dylib 0x00000001000a2724 do_begin + 308
18 libR.dylib 0x000000010009da1c Rf_eval + 1196
19 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
20 libR.dylib 0x000000010009d932 Rf_eval + 962
21 libR.dylib 0x00000001000a1a3d forcePromise + 157
22 libR.dylib 0x000000010009d817 Rf_eval + 679
23 libR.dylib 0x000000010009db65 Rf_eval + 1525
24 libR.dylib 0x00000001000a1a3d forcePromise + 157
25 libR.dylib 0x000000010009d817 Rf_eval + 679
26 libR.dylib 0x000000010009db65 Rf_eval + 1525
27 libR.dylib 0x00000001000a1a3d forcePromise + 157
28 libR.dylib 0x000000010009d817 Rf_eval + 679
29 libR.dylib 0x000000010009db65 Rf_eval + 1525
30 libR.dylib 0x000000010009e87c do_return + 140
31 libR.dylib 0x000000010009da1c Rf_eval + 1196
32 libR.dylib 0x00000001000a1a3d forcePromise + 157
33 libR.dylib 0x000000010009d817 Rf_eval + 679
34 libR.dylib 0x000000010009db65 Rf_eval + 1525
35 libR.dylib 0x00000001000a2724 do_begin + 308
36 libR.dylib 0x000000010009da1c Rf_eval + 1196
37 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
38 libR.dylib 0x000000010009d932 Rf_eval + 962
39 libR.dylib 0x000000010009fa55 do_set + 709
40 libR.dylib 0x000000010009da1c Rf_eval + 1196
41 libR.dylib 0x00000001000a2724 do_begin + 308
42 libR.dylib 0x000000010009da1c Rf_eval + 1196
43 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
44 libR.dylib 0x000000010009d932 Rf_eval + 962
45 libR.dylib 0x000000010009da1c Rf_eval + 1196
46 libR.dylib 0x000000010009da1c Rf_eval + 1196
47 libR.dylib 0x00000001000a2724 do_begin + 308
48 libR.dylib 0x000000010009da1c Rf_eval + 1196
49 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
50 libR.dylib 0x000000010009d932 Rf_eval + 962
51 libR.dylib 0x00000001000a2724 do_begin + 308
52 libR.dylib 0x000000010009da1c Rf_eval + 1196
53 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
54 libR.dylib 0x000000010009d932 Rf_eval + 962
55 libR.dylib 0x000000010009fa55 do_set + 709
56 libR.dylib 0x000000010009da1c Rf_eval + 1196
57 libR.dylib 0x00000001000a2724 do_begin + 308
58 libR.dylib 0x000000010009da1c Rf_eval + 1196
59 libR.dylib 0x000000010009da1c Rf_eval + 1196
60 libR.dylib 0x00000001000a2724 do_begin + 308
61 libR.dylib 0x000000010009da1c Rf_eval + 1196
62 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
63 libR.dylib 0x000000010009d932 Rf_eval + 962
64 libR.dylib 0x00000001000a2724 do_begin + 308
65 libR.dylib 0x000000010009da1c Rf_eval + 1196
66 libR.dylib 0x000000010009da1c Rf_eval + 1196
67 libR.dylib 0x00000001000a2724 do_begin + 308
68 libR.dylib 0x000000010009da1c Rf_eval + 1196
69 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
70 libR.dylib 0x000000010009d932 Rf_eval + 962
71 libR.dylib 0x00000001000a1a3d forcePromise + 157
72 libR.dylib 0x000000010009d817 Rf_eval + 679
73 libR.dylib 0x000000010009db65 Rf_eval + 1525
74 libR.dylib 0x00000001000a1a3d forcePromise + 157
75 libR.dylib 0x000000010009d817 Rf_eval + 679
76 libR.dylib 0x000000010009db65 Rf_eval + 1525
77 libR.dylib 0x00000001000a1a3d forcePromise + 157
78 libR.dylib 0x000000010009d817 Rf_eval + 679
79 libR.dylib 0x000000010009db65 Rf_eval + 1525
80 libR.dylib 0x000000010009e87c do_return + 140
81 libR.dylib 0x000000010009da1c Rf_eval + 1196
82 libR.dylib 0x00000001000a1a3d forcePromise + 157
83 libR.dylib 0x000000010009d817 Rf_eval + 679
84 libR.dylib 0x000000010009db65 Rf_eval + 1525
85 libR.dylib 0x00000001000a2724 do_begin + 308
86 libR.dylib 0x000000010009da1c Rf_eval + 1196
87 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
88 libR.dylib 0x000000010009d932 Rf_eval + 962
89 libR.dylib 0x000000010009fa55 do_set + 709
90 libR.dylib 0x000000010009da1c Rf_eval + 1196
91 libR.dylib 0x00000001000a2724 do_begin + 308
92 libR.dylib 0x000000010009da1c Rf_eval + 1196
93 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
94 libR.dylib 0x000000010009d932 Rf_eval + 962
95 libR.dylib 0x000000010009da1c Rf_eval + 1196
96 libR.dylib 0x000000010009da1c Rf_eval + 1196
97 libR.dylib 0x00000001000a2724 do_begin + 308
98 libR.dylib 0x000000010009da1c Rf_eval + 1196
99 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
100 libR.dylib 0x000000010009d932 Rf_eval + 962
101 libR.dylib 0x00000001000a2724 do_begin + 308
102 libR.dylib 0x000000010009da1c Rf_eval + 1196
103 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
104 libR.dylib 0x000000010009d932 Rf_eval + 962
105 libR.dylib 0x000000010009da1c Rf_eval + 1196
106 libR.dylib 0x00000001000a2724 do_begin + 308
107 libR.dylib 0x000000010009da1c Rf_eval + 1196
108 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
109 libR.dylib 0x000000010009d932 Rf_eval + 962
110 libR.dylib 0x000000010009fa55 do_set + 709
111 libR.dylib 0x000000010009da1c Rf_eval + 1196
112 libR.dylib 0x000000010009da1c Rf_eval + 1196
113 libR.dylib 0x00000001000a2724 do_begin + 308
114 libR.dylib 0x000000010009da1c Rf_eval + 1196
115 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
116 libR.dylib 0x000000010009d932 Rf_eval + 962
117 libR.dylib 0x00000001000a1a3d forcePromise + 157
118 libR.dylib 0x000000010009d817 Rf_eval + 679
119 libR.dylib 0x000000010009db65 Rf_eval + 1525
120 libR.dylib 0x000000010009dfbc Rf_evalList + 92
121 libR.dylib 0x00000001000dfe91 do_internal + 449
122 libR.dylib 0x000000010009da1c Rf_eval + 1196
123 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
124 libR.dylib 0x000000010009d932 Rf_eval + 962
125 libR.dylib 0x00000001000a2724 do_begin + 308
126 libR.dylib 0x000000010009da1c Rf_eval + 1196
127 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
128 libR.dylib 0x000000010009d932 Rf_eval + 962
129 libR.dylib 0x00000001000a1a3d forcePromise + 157
130 libR.dylib 0x000000010009d817 Rf_eval + 679
131 libR.dylib 0x000000010009db65 Rf_eval + 1525
132 libR.dylib 0x00000001000a1a3d forcePromise + 157
133 libR.dylib 0x000000010009d817 Rf_eval + 679
134 libR.dylib 0x000000010009db65 Rf_eval + 1525
135 libR.dylib 0x00000001000a2724 do_begin + 308
136 libR.dylib 0x000000010009da1c Rf_eval + 1196
137 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
138 libR.dylib 0x000000010009d932 Rf_eval + 962
139 libR.dylib 0x00000001000a2724 do_begin + 308
140 libR.dylib 0x000000010009da1c Rf_eval + 1196
141 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
142 libR.dylib 0x000000010009d932 Rf_eval + 962
143 libR.dylib 0x00000001000cbb51 do_logic2 + 801
144 libR.dylib 0x000000010009da1c Rf_eval + 1196
145 libR.dylib 0x000000010009dfbc Rf_evalList + 92
146 libR.dylib 0x000000010009dac7 Rf_eval + 1367
147 libR.dylib 0x00000001000cba84 do_logic2 + 596
148 libR.dylib 0x000000010009da1c Rf_eval + 1196
149 libR.dylib 0x00000001000a34c5 do_if + 53
150 libR.dylib 0x000000010009da1c Rf_eval + 1196
151 libR.dylib 0x00000001000a2724 do_begin + 308
152 libR.dylib 0x000000010009da1c Rf_eval + 1196
153 libR.dylib 0x000000010009da1c Rf_eval + 1196
154 libR.dylib 0x00000001000a2724 do_begin + 308
155 libR.dylib 0x000000010009da1c Rf_eval + 1196
156 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
157 libR.dylib 0x000000010009d932 Rf_eval + 962
158 libR.dylib 0x000000010009fa55 do_set + 709
159 libR.dylib 0x000000010009da1c Rf_eval + 1196
160 libR.dylib 0x00000001000a2724 do_begin + 308
161 libR.dylib 0x000000010009da1c Rf_eval + 1196
162 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
163 libR.dylib 0x000000010009d932 Rf_eval + 962
164 libR.dylib 0x00000001000a2724 do_begin + 308
165 libR.dylib 0x000000010009da1c Rf_eval + 1196
166 libR.dylib 0x000000010009da1c Rf_eval + 1196
167 libR.dylib 0x00000001000a2724 do_begin + 308
168 libR.dylib 0x000000010009da1c Rf_eval + 1196
169 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
170 libR.dylib 0x000000010009d932 Rf_eval + 962
171 libR.dylib 0x00000001000a1a3d forcePromise + 157
172 libR.dylib 0x000000010009d817 Rf_eval + 679
173 libR.dylib 0x000000010009db65 Rf_eval + 1525
174 libR.dylib 0x00000001000a1a3d forcePromise + 157
175 libR.dylib 0x000000010009d817 Rf_eval + 679
176 libR.dylib 0x000000010009db65 Rf_eval + 1525
177 libR.dylib 0x000000010009dfbc Rf_evalList + 92
178 libR.dylib 0x000000010009dac7 Rf_eval + 1367
179 libR.dylib 0x00000001000a34c5 do_if + 53
180 libR.dylib 0x000000010009da1c Rf_eval + 1196
181 libR.dylib 0x00000001000a2724 do_begin + 308
182 libR.dylib 0x000000010009da1c Rf_eval + 1196
183 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
184 libR.dylib 0x000000010009d932 Rf_eval + 962
185 libR.dylib 0x00000001000a2724 do_begin + 308
186 libR.dylib 0x000000010009da1c Rf_eval + 1196
187 libR.dylib 0x000000010009da1c Rf_eval + 1196
188 libR.dylib 0x00000001000a2724 do_begin + 308
189 libR.dylib 0x000000010009da1c Rf_eval + 1196
190 libR.dylib 0x000000010009da1c Rf_eval + 1196
191 libR.dylib 0x00000001000a2724 do_begin + 308
192 libR.dylib 0x000000010009da1c Rf_eval + 1196
193 libR.dylib 0x00000001000a0364 Rf_applyClosure + 724
194 libR.dylib 0x000000010009d932 Rf_eval + 962
195 libR.dylib 0x00000001000ce0b8 Rf_ReplIteration + 504
196 libR.dylib 0x00000001000ce3b1 R_ReplConsole + 161
197 libR.dylib 0x00000001000ce8c0 run_Rmainloop + 80
198 R 0x0000000100000eeb main + 27
199 R 0x0000000100000e74 start + 52
)
terminate called after throwing an instance of 'NSException'
Abort trap
--please do not edit the information below--
R Version:
platform = i386-apple-darwin9.8.0
arch = i386
os = darwin9.8.0
system = i386, darwin9.8.0
status =
major = 2
minor = 11.1
year = 2010
month = 05
day = 31
svn rev = 52157
language = R
version.string = R version 2.11.1 (2010-05-31)
Locale:
fr_CH.UTF-8/en_US.UTF-8/C/C/fr_CH.UTF-8/fr_CH.UTF-8
Search Path:
.GlobalEnv, package:stats, package:graphics, package:grDevices, package:utils, package:datasets, package:methods, Autoloads, package:base
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