vegan failed to load under Mac OS X Mavericks

Thu, Jan 8, 2015 5:24 AM

Problem solved after re-installation of X-Quartz. It seems some libraries were missing after the last update (I don?t know if its R fault or Yosemite operating system update)

thanks anyway

regards

Pedro

On 08/01/2015, at 11:54, Jari Oksanen <jari.oksanen at oulu.fi> wrote:

Howdy,

This is not a vegan issue: see this mailing list about the problems other people had with tcltk (tcltk is the key issue).

Next version of vegan can be loaded without tcltk and there should be patched versions of R-for-Mac that do not suffer with this problem. The next version of vegan can be obtained from http://r-forge.r-project.og/, <http://r-forge.r-project.og/,> but it no longer provides Mac binaries. For patched versions of R, see other messages in this mailing list.

Cheers, Jari Oksanen
From: R-SIG-Mac <r-sig-mac-bounces at r-project.org <mailto:r-sig-mac-bounces at r-project.org>> on behalf of Pedro Gomes <pagomes at bio.uminho.pt <mailto:pagomes at bio.uminho.pt>>
Sent: 18 December 2014 23:52
To: r-sig-mac at r-project.org <mailto:r-sig-mac at r-project.org>
Subject: [R-SIG-Mac] vegan failed to load under Mac OS X Mavericks
 
Hi

When trying to load Vegan in R 3.1.2 under under Mac OS X Mavericks I get the following error. Any idea why?

"starting httpd help server ... done
Error : .onLoad failed in loadNamespace() for 'tcltk', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.1/Resources/library/tcltk/libs/tcltk.so':
  dlopen(/Library/Frameworks/R.framework/Versions/3.1/Resources/library/tcltk/libs/tcltk.so, 10): Library not loaded: /usr/X11/lib/libXft.2.dylib
  Referenced from: /usr/local/lib/libtk8.6.dylib
  Reason: image not found
In addition: Warning message:
running command ''otool' -L '/Library/Frameworks/R.framework/Resources/library/tcltk/libs//tcltk.so'' had status 69 
Error: package or namespace load failed for ?vegan?

Agreeing to the Xcode/iOS license requires admin privileges, please re-run as root via sudo."

regards

Pedro Gomes




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CBMA - Molecular and Environmental Biology Centre
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vegan failed to load under Mac OS X Mavericks

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