Error while loading packages R 2.14.0
On 11-11-12 11:30 PM, Prof Brian Ripley wrote:
On Sun, 13 Nov 2011, Riccardo Romoli wrote:
Hi, I have already installed R 2.14.0 and I have some problem to load several packages, in particular xcms package. I installed it directly from the GUI and when I try to load it the R I have:
library(xcms)
Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so': dlopen(/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so, 6): Library not loaded: /usr/local/lib/libnetcdf.7.dylib Referenced from: /Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so Reason: image not found Inoltre: Warning message: In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) : there is no package called ?digest? Errore: package/namespace load failed for ?xcms?
I think the error is the absence of ibnetcdf.7.dylib. Do you have any idea how can I correct this error??
1) Ask BioC to build the package correctly, or 2) Build from the sources yourself, preferably using a static netcdf library. People should not be distributing Mac binary packages with hardcoded paths to dependencies not in the R framework: CRAN does not.
Not true. rggobi, Cairo and other Mac binaries on CRAN have hardcoded paths to a bunch of stuff that is not in the R framework.
In particular, /usr/local/lib need administrative privileges to populate.
Note that installing the external stuff needed by rggobi, Cairo etc also requires administrative privileges. Cheers, H.
Best Riccardo
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319