rgraphviz again
Julin Maloof <jnmaloof at ucdavis.edu> writes:
1) I note that there is a binary of Rgraphviz now available. Is that usable? And if so, where is it expecting graphviz to be installed? when I try it with graphviz installed in either /usr or /usr/local I get
I think Simon is the one building the Rgraphviz binary so he might be able to shed some light on where it is expected to work (with which version of R and whether a graphviz lib is required or not).
2) I have also tried installing Rgraphviz from source. In that case I get
Sys.putenv(LD_LIBRARY_PATH="/usr/local/lib/graphviz")
trying URL 'http://www.bioconductor.org/packages/bioc/stable/src/contrib/Rgraphviz_1.8.0.tar.gz' Content type 'application/x-gzip' length 1666191 bytes opened URL ================================================== downloaded 1627Kb * Installing *source* package 'Rgraphviz' ... checking for graphviz... The downloaded packages are in /private/tmp/RtmpK9aZCF/downloaded_packages checking for dotneato-config... not found checking for pkg-config... no
If you installed a recent graphviz, then there is no dotneat-config
script. Instead, for the autoconf tools to work, you need the
pkg-config program installed and PKG_CONFIG_PATH set appropriately
(/blah/lib/pkgconfig).
But it should also work to pass the --with-graphviz configure option.
Something like:
R CMD INSTALL --configure-args='--with-graphviz=/blah/graphviz' \
Rgraphviz_x.y.z.tar.gz
So I would try this first. If you still are having troubles, report
back, but please include R version and how you installed, graphviz
version and how/where installed, Rgraphviz version, height, weight...
cheers,
+ seth
failed configure: error: please specify a valid path to 'dotneato-config' version >= 1.12 or 'pkg-config' if you have graphviz >= 2.4 ./configure: line 1344: exit: using: numeric argument required ./configure: line 1344: exit: using: numeric argument required ERROR: configuration failed for package 'Rgraphviz'
The above make me wonder if I am not installing graphviz correctly. I can't find 'dotneato-config' or 'pkg-config' anywhere either. One of the previous posts makes reference to instructions on Stefano's page or the R Developers page. Current R Developers links take me to cran and no info on graphviz...does such a page exist somewhere? Any advice on what to try next or where to look for more info? Thanks, Julin
version
_ platform powerpc-apple-darwin7.9.0 arch powerpc os darwin7.9.0 system powerpc, darwin7.9.0 status major 2 minor 2.1 year 2005 month 12 day 20 svn rev 36812 language R graphviz 2.8 -- Julin Maloof Assistant Professor Section of Plant Biology University of California, Davis 1 Shields Ave Davis, CA, 95616 voice: (530) 752-8077 fax: (530) 752-5410
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac