Fab editor, enhance?
Dear all - while we are commenting on features that could go into the currently amazing editor, what about batch indenting? Or have I missed that? andrew --------------------------------------------------------------------------------- Dr. Andrew Beckerman Department of Animal and Plant Sciences, University of Sheffield, Alfred Denny Building, Western Bank, Sheffield S10 2TN, UK ph +44 (0)114 222 0026; fx +44 (0)114 222 0002 http://www.beckslab.staff.shef.ac.uk/ ----------------------------------------------------------------------------------
On 15 Jan 2008, at 19:36, Ken Nussear wrote:
Hi Just wondering if there is a way to "batch comment" in the R editor? I like to paste model outputs in with my scripts and comment them out so I can follow things later. I thought it would be useful to be able to insert a comment symbol to a batch of lines all at once. Any thoughts? Ken -- Kenneth E. Nussear Research Herpetologist, USGS (702) 564-4515 Fax (702) 564-4600 knussear at usgs.gov On Jan 15, 2008, at 3:00 AM, r-sig-mac-request at stat.math.ethz.ch wrote:
Send R-SIG-Mac mailing list submissions to r-sig-mac at stat.math.ethz.ch To subscribe or unsubscribe via the World Wide Web, visit
https://stat.ethz.ch/mailman/listinfo/r-sig-mac or, via email, send a message with subject or body 'help' to r-sig-mac-request at stat.math.ethz.ch You can reach the person managing the list at r-sig-mac-owner at stat.math.ethz.ch When replying, please edit your Subject line so it is more specific than "Re: Contents of R-SIG-Mac digest..." Today's Topics: 1. Re: [R] Install RSPerl in Leopard (Prof Brian Ripley) 2. building R package (Guillaume Blanchet) ---------------------------------------------------------------------- Message: 1 Date: Mon, 14 Jan 2008 19:08:26 +0000 (GMT) From: Prof Brian Ripley <ripley at stats.ox.ac.uk> Subject: Re: [R-SIG-Mac] [R] Install RSPerl in Leopard To: David Ochoa <dogcaesar at gmail.com> Cc: r-sig-mac at r-project.org Message-ID: <Pine.LNX.4.64.0801141812190.12548 at gannet.stats.ox.ac.uk> Content-Type: text/plain; charset="iso-8859-1" On Mon, 14 Jan 2008, Prof Brian Ripley wrote: This is not the most appropriate list. But the first answer is that the package is not aware of sub-architectures, introduced a while back in R. The best thing is to follow the posting guide and contact the author: if that fails, people on R-sig-mac might be able to walk you through the changes needed. It perhaps is as simple as editing RSPerl/src/RinPerlMakefile.in to say include $(R_HOME)/etc$(R_ARCH)/Makeconf That should fix the first problem. But cc1: error: invalid option ?arch=nocona? suggests there might be a further problem (for which use R-sig-mac). On my system at least that seems a compiler options mismatch (it works on my self-built version of R-devel with the above change). Removing -march=nocona in entries in /Library/Frameworks/R.framework/Resources/etc/i386/Makeconf on the CRAN build made this go to completion. (My build does not have those.) You can override in CFLAGS in personal Makevars (see 'Writing R Extensions'). But I'll let those more expert than I on R-sig-mac comment on that issue. On Mon, 14 Jan 2008, David Ochoa wrote: Hi, I am having problems installing RSPerl 0.92-1 in my Mac OSX 10.5.1. I?ve installed correctly R-2.6.1 with the .mpkg. I run the next command: <R CMD INSTALL --configure-args=' --with- in- perl ' RSPerl> And the next error message appears: RSPerl * Installing to library '/Library/Frameworks/R.framework/Resources/ library' * Installing *source* package 'RSPerl' ... checking for perl... /usr/bin/perl No support for any of the Perl modules from calling Perl from R. ***************************************************** Set PERL5LIB to /Library/Frameworks/R.framework/Resources/ library/RSPerl/perl ***************************************************** Testing: -F/Library/Frameworks/R.framework/.. -framework R Using '/usr/bin/perl' as the perl executable Perl modules (no): Adding R package to list of Perl modules to enable callbacks to R from Perl Creating the C code for dynamically loading modules with native code for Perl: R modules: R; linking: checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed Support R in Perl: yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating inst/scripts/RSPerl.csh config.status: creating inst/scripts/RSPerl.bsh config.status: creating src/RinPerlMakefile config.status: creating src/Makefile.PL config.status: creating cleanup config.status: creating src/R.pm config.status: creating R/perl5lib.R making target all in RinPerlMakefile RinPerlMakefile:5: /Library/Frameworks/R.framework/Resources/etc/ Makeconf: No such file or directory make: *** No rule to make target `/Library/Frameworks/R.framework/ Resources/etc/Makeconf'. Stop. calling make -f Makefile.perl install make: Makefile.perl: No such file or directory make: *** No rule to make target `Makefile.perl'. Stop. chmod: blib/lib/R.pm: No such file or directory Finished configuration ** libs ** arch - i386 gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/ R.framework/Resources/include -I/Library/Frameworks/R.framework/ Resources/include/i386 -I. -arch i386 -arch ppc -g -pipe -fno- common - DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -Wdeclaration- after- statement -I/usr/local/include -I/System/Library/Perl/5.8.8/ darwin- thread-multi-2level/CORE -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 - DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC -g -O2 - march=nocona -c Converters.c -o Converters.o cc1: error: invalid option ?arch=nocona? lipo: can't open input file: /var/folders/qc/qcR--kvAHYGoOkmr3ZNtvk ++ +TM/-Tmp-//cclHWEBN.out (No such file or directory) make: *** [Converters.o] Error 1 chmod: /Library/Frameworks/R.framework/Resources/library/RSPerl/ libs/ i386/*: No such file or directory ERROR: compilation failed for package 'RSPerl' ** Removing '/Library/Frameworks/R.framework/Resources/library/ RSPerl' Have I will changed any enviroment variable? Can anybody help me? Thanks David ______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 ------------------------------ Message: 2 Date: Mon, 14 Jan 2008 14:42:07 -0700 From: "Guillaume Blanchet" <gblanchet.list at gmail.com> Subject: [R-SIG-Mac] building R package To: r-sig-mac at stat.math.ethz.ch Message-ID: <2f2c96cb0801141342u111cecf4m4ca4e5da68228dbd at mail.gmail.com> Content-Type: text/plain Hi all ! I just installed Mac OS X 10.5.1 on my Intel MacBook Pro. Since I have my personal packages that I build and modify every so often I also installed Xcode 3. My packages contain either some C code, some Fortran code or both. However, I can not build a binary of my package, which I know to be error-free since they were running without any bugs when I was running Tiger (Mac OS 10.4.11). The message that is sent to me when I launch the command "R CMD build --binary AEM" (AEM being the name of my package) in the terminal is: macintosh:AEM Package ti-guiblanc$ R CMD build --binary AEM * checking for file 'AEM/DESCRIPTION' ... OK * preparing 'AEM': * checking DESCRIPTION meta-information ... OK * cleaning src * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution /var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719 * Installing *source* package 'AEM' ... ** libs ** arch - i386 gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 - fPIC -g -O2 -march=nocona -c buildbinary.c -o buildbinary.o gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 - undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/ local/lib -o AEM.so buildbinary.o -F/Library/Frameworks/R.framework/.. - framework R ld: warning, duplicate dylib /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libgcc_s.1.dylib ** arch - ppc gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c buildbinary.c -o buildbinary.o gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 - undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/ local/lib -o AEM.so buildbinary.o -F/Library/Frameworks/R.framework/.. - framework R ld: warning, duplicate dylib /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libgcc_s.1.dylib ld: in /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libstdc++. 6.dylib, file is not of required architecture collect2: ld returned 1 exit status make: *** [AEM.so] Error 1 chmod: /var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719/AEM/ libs/ppc/*: No such file or directory ERROR: compilation failed for package 'AEM' ** Removing '/var/folders/+5/+5Ch2A6BEb4+iULWkg5XEU+++TI/-Tmp-/Rinst965351719/ AEM' ERROR * installation failed My knowledge of the UNIX code and the terminal is limited, so please be gentle ! Thanks in advance for any help. Have a nice day ! Guillaume Blanchet PhD. candidate University of Alberta [[alternative HTML version deleted]] ------------------------------ _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac End of R-SIG-Mac Digest, Vol 59, Issue 8 ****************************************
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