problem loading ggplot2 package
I have no special knowledge, but a few questions to try to narrow things down: - Is there anything unusual in your .Rprofile? - Did you try installing ggplot using the "Package Installer" menu item in the GUI? - Is it ggplot, or actually the load of 'proto' that's failing? (Can you "library(proto)" OK?) - Try creating a new user on your Mac, logging in, installing R and then ggplot2. Re permissions, seems unlikely, but running the voodoo "Repair Permissions" in Disk Utility won't hurt... Ben
On Sat, Mar 5, 2011 at 2:50 PM, linsleys <linsleys at comcast.net> wrote:
None of these suggestions fixed my problem. ?Uninstalled R, re-installed the latest version and re-loaded ggplot2. ?Still get the same error message. ?I'm wondering about the env = envir part of the error message- could it be a permissions problem? p
?library(ggplot2)
Loading required package: reshape Loading required package: plyr Attaching package: 'reshape' The following object(s) are masked from 'package:plyr': ? ?round_any Loading required package: grid Loading required package: proto Error in assign(names[i], dots[[i]], env = envir) : ?invalid first argument Error : unable to load R code in package 'ggplot2' Error: package/namespace load failed for 'ggplot2' $version.string [1] "R version 2.12.2 (2011-02-25)"
SystemInfo()
Error: could not find function "SystemInfo"
Sys.info()
? ? ? ? ? ? ? ? sysname ? ? ? ? ? ? ? ?"Darwin" ? ? ? ? ? ? ? ? release ? ? ? ? ? ? ? ?"10.6.0" ? ? ? ? ? ? ? ? version "Darwin Kernel Version 10.6.0: Wed Nov 10 18:13:17 PST 2010; root:xnu-1504.9.26~3/RELEASE_I386" ? ? ? ? ? ? ? ?nodename ? ?"MacBook-Chef.local" ? ? ? ? ? ? ? ? machine ? ? ? ? ? ? ? ? ?"i386" ? ? ? ? ? ? ? ? ? login ? ? ? ? ? ? ?"linsleys" ? ? ? ? ? ? ? ? ? ?user ? ? ? ? ? ? ?"linsleys"
On Fri, Mar 4, 2011 at 6:13 PM, Anirban Mukherjee <anirbanm at smu.edu.sg> wrote:
I would suggest updating R to 2.12.2. That should be fairly seamless/painless. A -- Anirban Mukherjee | Assistant Professor, Marketing LKCSB, Singapore Management University 5056 School of Business, 50 Stamford Road Singapore 178899 | +65-6828-1932 On Mar 5, 2011, at 12:14 AM, MacQueen, Don wrote:
Peter, There should not be a problem with ggplot2 on a Mac; I was able to install and load it without difficulty just now (see below). ?(though apparently some dependencies are not available, so perhaps some ggplot2 functions won't work properly; I don't know) This does tend to suggest something is awry with your R installation, as Bob Bond-Lamberty suggested in his response. Note that I have 32 bit R 2.12.2 whereas you have 64 bit 2.12.1. I don't think the 32 vs 64 bit is the problem, since I can run R64 and load ggplot2. Does ?traceback() used immediately after the error, give any useful information? Not much help, I know... -Don
install.packages('ggplot2',dep=TRUE)
--- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done Warning: dependencies 'marray', 'affy', 'Biobase' are not available also installing the dependencies 'logspline', 'digest', 'quantreg', 'hexbin' trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.12/logspline_2.1 .3.tgz' Content type 'application/x-gzip' length 409453 bytes (399 Kb) opened URL ================================================== downloaded 399 Kb trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.12/digest_0.4.2. tgz' Content type 'application/x-gzip' length 120633 bytes (117 Kb) opened URL ================================================== downloaded 117 Kb trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.12/quantreg_4.57 .tgz' Content type 'application/x-gzip' length 2818374 bytes (2.7 Mb) opened URL ================================================== downloaded 2.7 Mb trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.12/hexbin_1.24.0 .tgz' Content type 'application/x-gzip' length 690100 bytes (673 Kb) opened URL ================================================== downloaded 673 Kb trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.12/ggplot2_0.8.9 .tgz' Content type 'application/x-gzip' length 2481399 bytes (2.4 Mb) opened URL ================================================== downloaded 2.4 Mb The downloaded packages are in /var/folders/pa/pamYryRNGGKLDVNRYyxBt+++m+c/-Tmp-//RtmplZqsQp/downloaded_pa ckages
require(ggplot2)
Loading required package: ggplot2 Loading required package: reshape Loading required package: plyr Attaching package: 'reshape' The following object(s) are masked from 'package:plyr': ? ?round_any Loading required package: grid Loading required package: proto
sessionInfo()
R version 2.12.2 (2011-02-25) Platform: i386-apple-darwin9.8.0/i386 (32-bit) locale: [1] C attached base packages: [1] grid ? ? ?stats ? ? graphics ?grDevices utils ? ? datasets ?methods [8] base other attached packages: [1] ggplot2_0.8.9 proto_0.3-8 ? reshape_0.8.4 plyr_1.4 loaded via a namespace (and not attached): [1] tcltk_2.12.2 tools_2.12.2 -- Don MacQueen Lawrence Livermore National Laboratory 7000 East Ave., L-627 Livermore, CA 94550 925-423-1062 On 3/4/11 7:19 AM, "linsleys" <linsleys at comcast.net> wrote:
I'm having trouble loading ggplot2 using R version 2.12.1, as shown below. I can't seem to find a relevant post that fixes my problem. Any help would be very much appreciated. Thanks, peter l
install.packages('ggplot2', dep = TRUE)
trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.12/ggplot2_0.8. 9.tgz' Content type 'application/x-gzip' length 2481399 bytes (2.4 Mb) opened URL ================================================= downloaded 2.4 Mb The downloaded packages are in /var/folders/XF/XF0tU7gdGTeF4Th7KhKYDk+++TI/-Tmp-//RtmpFMnqLB/downloaded_p ackages
library(ggplot2)
Error in assign(names[i], dots[[i]], env = envir) : invalid first argument Error : unable to load R code in package 'ggplot2' Error: package/namespace load failed for 'ggplot2' sessionInfo() R version 2.12.1 (2010-12-16) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] grid stats graphics grDevices utils datasets methods [8] base other attached packages: [1] proto_0.3-8 reshape_0.8.4 plyr_1.4 loaded via a namespace (and not attached): [1] tcltk_2.12.2 tools_2.12.2 -- Peter and Leslie Linsley 2528 11th Ave W Seattle, WA 98119 linsleys at comcast.net 206.818.3206 ?P-cell 206-818-3167 ?L-cell
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-- Peter and Leslie Linsley 2528 11th Ave W Seattle, WA 98119 linsleys at comcast.net 206.818.3206? P-cell 206-818-3167? L-cell
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