64-bit build of R crashes while idle
On Nov 6, 2008, at 11:25 , Steve Lianoglou wrote:
Hi, Early last week, I installed the 64-bit leopard build for R provided here: http://r.research.att.com/ I've realized that when R.app is running in the background (and sitting idle), it eventually beach-balls. When I switch over to see what's happening, I see that R is crashed, and it's giving me options to: * abort * save workspace then abort * 1 or 2 others Sorry, I didn't copy the issue down exactly because I hastily quit it and reinstalled R 2.7.2 to get back to work.
Note that the Leopard build contains both 32-bit *and* 64-bit, so you don't have to install anything special to get back to 32-bit - just start the 32-bit version of the GUI and you're set. Cheers, S
I'm not sure if it's R itself, or the R.app GUI ... I can mess
around w/ it a bit later next week once I get passed some deadlines.
I wonder if it's the R.app gui that's the problem, and not R itself.
I'm running R 2.8 via the terminal now to see if it eventually hangs/
core-dumps/whatever.
Are other people working with 64-bit R/R.apphaving these issues? Is
the best path to using 64-bit R via custom compilation? Maybe ignore
R.app for now? What are you folks doing?
Thanks,
-steve
Crash log:
Process: R [3009]
Path: /Applications/R.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: R 2.8.0 GUI 1.26 (5256)
Code Type: X86-64 (Native)
Parent Process: launchd [171]
Date/Time: 2008-11-05 17:18:21.279 -0500
OS Version: Mac OS X 10.5.5 (9F33)
Report Version: 6
Exception Type: EXC_CRASH (SIGSEGV)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Crashed Thread: 1
Thread 0:
0 libSystem.B.dylib 0x00007fffffe01259 __longcopy + 89
1 libSystem.B.dylib 0x00007fffffe00882 __memcpy + 226
2 com.apple.security 0x00007fff83612bea
Security::NameValuePair::CloneData(Security::CssmData const&) + 60
3 com.apple.security 0x00007fff83612d2a
Security::NameValuePair::NameValuePair(Security::CssmData const&) +
108
4 com.apple.security 0x00007fff83612e94
Security
::NameValueDictionary::NameValueDictionary(Security::CssmData
const&) + 136
5 com.apple.security 0x00007fff8352436d
Security::KeychainCore::CCallbackMgr::consume(unsigned int, unsigned
int, Security::CssmData const&) + 41
6 com.apple.security 0x00007fff8360985a
Security
::SecurityServer
::NotificationPort::receive(Security::MachPlusPlus::Message const&)
+ 360
7 com.apple.security 0x00007fff83627767
Security::MachPlusPlus::CFAutoPort::cfCallback(__CFMachPort*, void*,
long, void*) + 49
8 com.apple.CoreFoundation 0x00007fff83301a87
__CFMachPortPerform + 119
9 com.apple.CoreFoundation 0x00007fff833233cc
CFRunLoopRunSpecific + 3516
10 com.apple.HIToolbox 0x00007fff816eeea2
RunCurrentEventLoopInMode + 278
11 com.apple.HIToolbox 0x00007fff816eecd8
ReceiveNextEventCommon + 322
12 com.apple.HIToolbox 0x00007fff816eeb83
BlockUntilNextEventMatchingListInMode + 79
13 com.apple.AppKit 0x00007fff83d94c44 _DPSNextEvent
+ 603
14 com.apple.AppKit 0x00007fff83d94583 -
[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 136
15 org.R-project.R 0x00000001000077d6 -[RController
doProcessEvents:] + 182
16 org.R-project.R 0x00000001000049f0 -[RController
handleReadConsole:] + 144
17 org.R-project.R 0x000000010000dd61 Re_ReadConsole
+ 449
18 org.R-project.R 0x0000000100019260
run_REngineRmainloop + 896
19 org.R-project.R 0x00000001000109e7 -[REngine
runREPL] + 119
20 org.R-project.R 0x0000000100001f99 main + 729
21 org.R-project.R 0x0000000100001c94 start + 52
Thread 1 Crashed:
0 libSystem.B.dylib 0x00007fff810c75f6 mach_msg_trap
+ 10
1 libSystem.B.dylib 0x00007fff810cec2f mach_msg + 59
2 com.apple.CoreFoundation 0x00007fff83322c6f
CFRunLoopRunSpecific + 1631
3 com.apple.CFNetwork 0x00007fff828f7fa3
CFURLCacheWorkerThread(void*) + 321
4 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
5 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 2:
0 libSystem.B.dylib 0x00007fff811135c6 select
$DARWIN_EXTSN + 10
1 com.apple.Foundation 0x00007fff8011ee25
__NSThread__main__ + 1157
2 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
3 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 3:
0 libSystem.B.dylib 0x00007fff810c7656
semaphore_timedwait_signal_trap + 10
1 libSystem.B.dylib 0x00007fff810f66ce
_pthread_cond_wait + 1207
2 com.apple.Foundation 0x00007fff801621e4 -[NSCondition
waitUntilDate:] + 228
3 com.apple.Foundation 0x00007fff80162012 -
[NSConditionLock lockWhenCondition:beforeDate:] + 130
4 com.apple.AppKit 0x00007fff83dfcb7d -
[NSUIHeartBeat _heartBeatThread:] + 417
5 com.apple.Foundation 0x00007fff8011ee25
__NSThread__main__ + 1157
6 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
7 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 4:
0 libSystem.B.dylib 0x00007fff810ce5be
__semwait_signal + 10
1 com.apple.QuartzCore 0x00007fff80548a5d
fe_fragment_thread + 54
2 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
3 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 5:
0 libSystem.B.dylib 0x00007fff810ce5be
__semwait_signal + 10
1 com.apple.QuartzCore 0x00007fff80548a5d
fe_fragment_thread + 54
2 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
3 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 6:
0 libSystem.B.dylib 0x00007fff810ce5be
__semwait_signal + 10
1 com.apple.QuartzCore 0x00007fff80548a5d
fe_fragment_thread + 54
2 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
3 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 7:
0 libSystem.B.dylib 0x00007fff810ce5be
__semwait_signal + 10
1 com.apple.QuartzCore 0x00007fff80548a5d
fe_fragment_thread + 54
2 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
3 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 8:
0 libSystem.B.dylib 0x00007fff810ce5be
__semwait_signal + 10
1 com.apple.QuartzCore 0x00007fff80548a5d
fe_fragment_thread + 54
2 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
3 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 9:
0 libSystem.B.dylib 0x00007fff810ce5be
__semwait_signal + 10
1 com.apple.QuartzCore 0x00007fff80548a5d
fe_fragment_thread + 54
2 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
3 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 10:
0 libSystem.B.dylib 0x00007fff810ce5be
__semwait_signal + 10
1 com.apple.QuartzCore 0x00007fff80548a5d
fe_fragment_thread + 54
2 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
3 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 11:
0 libSystem.B.dylib 0x00007fff810c75f6 mach_msg_trap
+ 10
1 libSystem.B.dylib 0x00007fff810cec2f mach_msg + 59
2 com.apple.CoreFoundation 0x00007fff83322c6f
CFRunLoopRunSpecific + 1631
3 com.apple.Foundation 0x00007fff8017e440 +
[NSURLConnection(NSURLConnectionReallyInternal) _resourceLoadLoop:]
+ 288
4 com.apple.Foundation 0x00007fff8011ee25
__NSThread__main__ + 1157
5 libSystem.B.dylib 0x00007fff810f5913 _pthread_start
+ 316
6 libSystem.B.dylib 0x00007fff810f57d5 thread_start +
13
Thread 1 crashed with X86 Thread State (64-bit):
rax: 0x0000000010004005 rbx: 0x0000000000000000 rcx:
0x0000000113945918 rdx: 0x0000000000000000
rdi: 0x0000000113945a10 rsi: 0x0000000003000006 rbp:
0x0000000113945970 rsp: 0x0000000113945918
r8: 0x0000000000003603 r9: 0x0000000000000000 r10:
0x0000000000000450 r11: 0x0000000000000202
r12: 0x0000000000003603 r13: 0x0000000000000450 r14:
0x0000000113945a10 r15: 0x0000000003000006
rip: 0x00007fff810c75f6 rfl: 0x0000000000000202 cr2:
0x000000007bb0b000
Binary Images:
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libGLU.dylib
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Versions/A/QD
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usr/lib/libSystem.B.dylib
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usr/lib/libobjc.A.dylib
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