R 2.15.2, OS X 10.8.2, JGR
Thanks. But I am still stuck. No matter which command I give, I get the following:
sudo R CMD javareconf Password: Java interpreter : /usr/bin/java Java version : 1.6.0_29 Java home path : /Library/Java/JavaVirtualMachines/1.6.0_29-b11-402.jdk/Contents/Home Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar Java library path: JNI linker flags : -framework JavaVM JNI cpp flags : -I$(JAVA_HOME)/include
Note the Java home path. But when I do the following:
bash-$ which java /usr/bin/java bash-$ java -version java version "1.7.0_06" Java(TM) SE Runtime Environment (build 1.7.0_06-b24) Java HotSpot(TM) 64-Bit Server VM (build 23.2-b09, mixed mode)
So where is ti getting that the home path is to /Library/Java/JavaVirtualMachines/1.6.0_29-b11-402.jdk/Contents/Home? Is there a file that I can hand edit to give R the correct values? Thanks. -Roy M. On Dec 28, 2012, at 1:28 PM, Marc Schwartz <marc_schwartz at me.com> wro
On Dec 28, 2012, at 3:05 PM, peter dalgaard <pdalgd at gmail.com> wrote:
On Dec 28, 2012, at 20:40 , Roy Mendelssohn - NOAA Federal wrote:
Hi All: I recently upgraded my computer to 10.8.2, and my Java is now java 1.7 from Oracle. I am running R 2.15.2, and now rjava and JGR don't work because what appears to be a problem with ipot. I tried reinstalling rjava and got the following:
I can't remember this kind of stuff form one occasion to the next either, but wouldn't it be something with "sudo R CMD javareconf" ?
For Mountain Lion, it should be: sudo R CMD javareconf JAVA_CPPFLAGS=-I/System/Library/Frameworks/JavaVM.framework/Headers Regards, Marc Schwartz
********************** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ********************** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center 1352 Lighthouse Avenue Pacific Grove, CA 93950-2097 e-mail: Roy.Mendelssohn at noaa.gov (Note new e-mail address) voice: (831)-648-9029 fax: (831)-648-8440 www: http://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected" "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.