Loading rgl fails on 2.7.0
Thanks. I had already tried to install with menu Package &
Data:Package Installer from CRAN (Sources). That crashed R.
Now on your advice, I ran
> install.packages('rgl', type = 'source', lib = '/Library/Frameworks/
R.framework/Versions/2.7/Resources/library')
trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/rgl_0.76.tar.gz'
Content type 'application/x-gzip' length 803143 bytes (784 Kb)
opened URL
==================================================
downloaded 784 Kb
* Installing *source* package 'rgl' ...
checking for gcc... gcc -arch i386 -isysroot /Developer/SDKs/
MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99
<snip>
checking for sys/types.h... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
<snip>
The downloaded packages are in
/private/var/folders/TG/TG6nWu2pHYCI-BdWWiyMxU+++TI/-Tmp-/RtmpkjuNX6/
downloaded_packages
Warning message:
In install.packages("rgl", type = "source", lib = "/Library/Frameworks/
R.framework/Versions/2.7/Resources/library") :
installation of package 'rgl' had non-zero exit status
yes
checking png.h usability... no
checking png.h presence... no
checking for png.h... no
checking for png_read_update_info in -lpng... no
configure: libpng header and lib found
configure: using libpng dynamic linkage
checking for X... no
configure: error: X11 not found but required, configure aborted.
ERROR: configuration failed for package 'rgl'
** Removing '/Library/Frameworks/R.framework/Versions/2.7/Resources/
library/rgl'
So it's not seeing X11, even though I had it running.
On Feb 12, 2008, at 12:44 AM, Prof Brian Ripley wrote:
The URL is for a binary package from CRAN.
So the 'what I am doing wrong' is attempting to use CRAN binaries
with a non-CRAN build of R. I've succeeded with type="source".
That repository ('http://cran.r-project.org/bin/macosx/universal/contrib/2.7)
is not current -- it has not been touched for 2.5 months.
There is no 'R 2.7.0' as yet: this is R-devel and it is somewhat
unstable -- there is a new quartz() device and I fixed a segfault
since the version mentioned and there are graphics changes in
progress that may lead to incorrect output until finished. You
should expect to have to install packages from source in the exact R
version you use -- that is if you update R-devel you may need to re-
install packages. (I only know that to be true of packages
providing graphics devices, but the principle is general.)
On Mon, 11 Feb 2008, Duncan Murdoch wrote:
On 11/02/2008 9:09 PM, Michael Kubovy wrote:
Hi, Can anyone tell me what I'm doing wrong here:
install.packages('rgl')
trying URL 'http://cran.r-project.org/bin/macosx/universal/contrib/2.7/rgl_0.74.tgz' Content type 'application/x-gzip' length 3194464 bytes (3.0 Mb) opened URL ================================================== downloaded 3.0 Mb The downloaded packages are in /var/folders/TG/TG6nWu2pHYCI-BdWWiyMxU+++TI/-Tmp-//RtmpHTwuaH/ downloaded_packages
require(ca)
Loading required package: ca Loading required package: rgl Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/Library/Frameworks/R.framework/ Resources/library/rgl/libs/i386/aglrgl.so': dlopen(/Library/Frameworks/R.framework/Resources/library/rgl/libs/ i386/aglrgl.so, 6): Library not loaded: /Library/Frameworks/ R.framework/Versions/2.6/Resources/lib/libR.dylib Referenced from: /Library/Frameworks/R.framework/Resources/ library/ rgl/libs/i386/aglrgl.so Reason: image not found Error : .onLoad failed in 'loadNamespace' for 'rgl' Error: package 'rgl' could not be loaded
It looks as though rgl is referencing something from R 2.6. Did you build rgl, or download a binary? Duncan Murdoch
R version 2.7.0 Under development (unstable) (2008-02-05 r44340) i386-apple-darwin8.10.1 locale: en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
_____________________________
Professor Michael Kubovy
University of Virginia
Department of Psychology
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Parcels: Room 102 Gilmer Hall
McCormick Road Charlottesville, VA 22903
Office: B011 +1-434-982-4729
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Fax: +1-434-982-4766
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-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
_____________________________
Professor Michael Kubovy
University of Virginia
Department of Psychology
USPS: P.O.Box 400400 Charlottesville, VA 22904-4400
Parcels: Room 102 Gilmer Hall
McCormick Road Charlottesville, VA 22903
Office: B011 +1-434-982-4729
Lab: B019 +1-434-982-4751
Fax: +1-434-982-4766
WWW: http://www.people.virginia.edu/~mk9y/