Problem with Devel version (R 3.6) for Mac OS X

Thanks - there was a bug in the sync script that synchronizes binaries from the build machines to the webserver (created when we stopped syncing mavericks binaries) so that the binaries were not correctly synced with the web server. Hence a stale .pkg and tar balls were on the webserver. It should be fixed now.

Thanks,
Simon

On Apr 15, 2019, at 15:39, peter dalgaard <pdalgd at gmail.com> wrote:

I can confirm this. This time, also the tarball seems out of sync. Simon?

-pd

On 15 Apr 2019, at 21:21 , Pages, Herve <hpages at fredhutch.org> wrote:

I have a similar problem. Today https://urldefense.proofpoint.com/v2/url?u=https-3A__mac.r-2Dproject.org_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=O8J-HYpPitWLoxGDvjcufgtTqIsXsaAXrIZQUS5wRjA&s=fDm3RwOEEK-_iSChqplUgpNmwp97v7xzTqwSZB-kUkA&e= says:

  R-3.6-branch
  3.6.0 beta
  (2019/04/14, r76394)

but after downloading and installing it I got:

  R version 3.6.0 alpha (2019-04-09 r76363)

Thanks,
H.

On 4/11/19 08:11, Bryan Hanson wrote:

Sorry if I was not clear.  I downloaded R-3.6-branch-el-capitan-signed.pkg from https://urldefense.proofpoint.com/v2/url?u=https-3A__mac.r-2Dproject.org_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=tOYTB-iEp3DlgJ-5SEny_fPYOJHf_rO6qqg9TtJuIqk&e=<https://urldefense.proofpoint.com/v2/url?u=https-3A__mac.r-2Dproject.org_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=tOYTB-iEp3DlgJ-5SEny_fPYOJHf_rO6qqg9TtJuIqk&e=> (redirects from r.research.att.com <https://urldefense.proofpoint.com/v2/url?u=http-3A__r.research.att.com_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=ehDMrFC-4v3rt9_SEm-qgPJvcGrOE-QzaN7v9dUoa78&e=>), which is the binary  + GUI with installer.  Once it installed, the start up message said it was r76245, but the web site said r76363.

Bryan

On Apr 11, 2019, at 10:41 AM, peter dalgaard <pdalgd at gmail.com> wrote:

Nit: 3.6.x is not the devel version at this point (even if unreleased). Dunno why there is no actual R-devel (3.7.x) binaries.

However, the tarball does have (in Rversion.h)

#define R_SVN_REVISION 76363

and SVN-REVISION likewise

are you seeing something different with the .pkg version?

-pd

On 11 Apr 2019, at 16:09 , Bryan Hanson <hanson at depauw.edu> wrote:

Thanks Simon for getting that build running again.  I?m not sure if it matters, but the website says the current version is r76363 but what was downloaded was r76245.

Bryan

On Apr 11, 2019, at 8:30 AM, Simon Urbanek <Simon.Urbanek at r-project.org> wrote:

Elizabeth,

yes, if the status say FAILED then you cannot install that R version since it doesn't work. However, the current nightly build shows OK so you please try that one.

Cheers,
Simon

On Apr 8, 2019, at 7:38 PM, Elizabeth Purdom <epurdom at stat.berkeley.edu> wrote:

Hello,

I am wanting to download the development version for R. I have Mac OS X 11.6 and I usually go to https://urldefense.proofpoint.com/v2/url?u=http-3A__r.research.att.com_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=ehDMrFC-4v3rt9_SEm-qgPJvcGrOE-QzaN7v9dUoa78&e=<https://urldefense.proofpoint.com/v2/url?u=http-3A__r.research.att.com_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=oFNo_QwM9UeW-_-oCb3ONvUkqd9XfbLSErM0_0cPZfs&s=ehDMrFC-4v3rt9_SEm-qgPJvcGrOE-QzaN7v9dUoa78&e=> and download a dmg from there. However, the devel version is listed as  3.5.2 (2018/12/20, r75870), not 3.6. When I downloaded it anyway, I couldn?t use the development version of bioconductor because I didn?t have the right R.

Also, the R.app for that dmg did not work (only the command line worked), with a message that I should check to make sure I have the right OS (see full report below). The website just says el-capitan, which I do have. (the log for the development version also says make FAILED).

I feel like somehow I?m getting a non-updated version of a mirror or something.

Thanks for any help,
Elizabeth Purdom

-------------
Associate Professor
Department of Statistics, UC Berkeley

(510) 642-6154 (o) | (510) 642-7892 (f) | epurdom at stat.berkeley.edu
Mailing: 367 Evans Hall, Berkeley, CA 94720-3860
Office: 433 Evans Hall


System Software Overview:

System Version:	OS X 10.11.6 (15G22010)
Kernel Version:	Darwin 15.6.0


Error message:

Process:               R [56142]
Path:                  /Applications/R.app/Contents/MacOS/R
Identifier:            org.R-project.R
Version:               ???
Code Type:             X86-64 (Native)
Parent Process:        ??? [1]
Responsible:           R [56142]
User ID:               501

Date/Time:             2019-04-08 16:30:33.337 -0700
OS Version:            Mac OS X 10.11.6 (15G22010)
Report Version:        11
Anonymous UUID:        8A5D3691-2F85-AD45-A9AA-66C6B7146343

Sleep/Wake UUID:       182C0109-41E6-4708-A6E8-2A8153BE1F27

Time Awake Since Boot: 450000 seconds
Time Since Wake:       260 seconds

System Integrity Protection: enabled

Crashed Thread:        0

Exception Type:        EXC_BREAKPOINT (SIGTRAP)
Exception Codes:       0x0000000000000002, 0x0000000000000000
Exception Note:        EXC_CORPSE_NOTIFY

Application Specific Information:
dyld: launch, loading dependent libraries

Dyld Error Message:
Library not loaded: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libR.dylib
Referenced from: /Applications/R.app/Contents/MacOS/R
Reason: image not found

Binary Images:
0x7fff63820000 -     0x7fff63857a47  dyld (360.22) <6B9CD3BA-2D60-3629-A0CB-AB810F55E8DD> /usr/lib/dyld

Model: MacBookAir7,2, BootROM MBA71.0178.B00, 2 processors, Intel Core i7, 2.2 GHz, 8 GB, SMC 2.27f2
Graphics: Intel HD Graphics 6000, Intel HD Graphics 6000, Built-In
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x483943434E4E4E384A544D4C41522D4E544D
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x483943434E4E4E384A544D4C41522D4E544D
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x117), Broadcom BCM43xx 1.0 (7.21.95.178.1a2)
Bluetooth: Version 4.4.6f4, 3 services, 19 devices, 1 incoming serial ports
Network Service: AirPort, AirPort, en0
Serial ATA Device: APPLE SSD SM0512G, 500.28 GB
USB Device: USB 3.0 Bus
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: MacBook Air, Apple Inc., 27.2













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-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com

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-- 
Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319

-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com