Message-ID: <6A8AE244-AF27-4DD2-B346-8181861A3344@mac.com>
Date: 2006-04-20T16:47:13Z
From: S Kong
Subject: plier source compilation error related to dylib
Hello, I was trying to install BioConductor plier package under R64
of Simon's. ( Quad G5 + 10.4.6 + Xcode 2.2.1 + powerpc-apple-darwin8-
gcc-4.0.1) The plier package is an expression index calculation
algorithm for Affymetrix microarray
In the end, I gave up with the BioConductor plier package and started
with Affymetrix plier source code to build .so.
But errors were that dylib could not be found for libgfortran.
0.dylib, ibgcc_s.1.0.dylib, and libreadline.5.dylib.
Those dylib are located at /usr/local/lib64/R/lib/
Could anyone help me with this? Thanks!!!
% R64 CMD SHLIB affyplier.cpp plieralg.cpp plier_impl.cpp rwrapper.cpp
g++ -bundle -flat_namespace -undefined suppress -m64 -L/usr/local/lib
-L/usr/local/lib64/R/lib -o affyplier.so affyplier.o plieralg.o
plier_impl.o rwrapper.o -L/usr/local/lib64/R/lib -lR
ld64 warning: in affyplier.o, file does not contain requested
architecture
ld64 warning: indirect library libgfortran.0.dylib could not be
loaded: file not found: libgfortran.0.dylib
ld64 warning: indirect library libgcc_s.1.0.dylib could not be
loaded: file not found: libgcc_s.1.0.dylib
ld64 warning: indirect library libreadline.5.dylib could not be
loaded: file not found: libreadline.5.dylib