test failures
FWIW R built the official way doesn't have such problems, so I would not be surprised that it is an issue with your toolchain and/or the way you build R. Fink has been historically known for having issues with compilers (and library mismatches) so I would suggest looking at your end of the affair. For comparison the most recent builds and check results using the official tools are available at http://r.research.att.com/ Cheers, Simon
On Jun 30, 2011, at 9:59 PM, Duncan Murdoch wrote:
On 11-06-30 9:48 PM, BABA Yoshihiko wrote:
Dear all, I am a MacOSX/Fink (which is more or less like Debian's APT) maintainer and making R binary. One of the users tried test suite with make -k check and get the following results. Some differences are numerical, while others show sign differences in the result. Could someone possible explain/fix them?
You need to examine the differences, and decide which ones are problems, and which ones are inconsequential. If you think something is a problem, then tell us that. Sometimes numerical differences (including signs) matter, and sometimes they don't. Duncan Murdoch
Thanks -------- #!/bin/sh -ev make -k check || exit 2 make[2]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule. WARNING: ignoring environment value of R_HOME Testing examples for package 'base' Testing examples for package 'tools' comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK Testing examples for package 'utils' Testing examples for package 'grDevices' comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... 1951c1951 < [1,] 0.00000 0.000000 0.000000e+00 ---
[1,] 0.00000 0.000000e+00 0.000000e+00
1952c1952 < [2,] 53.48418 175.364685 3.780017e+01 ---
[2,] 53.48418 1.753647e+02 3.780017e+01
1953c1953 < [3,] 71.91841 -68.706608 8.786408e+01 ---
[3,] 71.91841 -6.870661e+01 8.786408e+01
1954c1954 < [4,] 32.24075 -9.660595 -1.301930e+02 ---
[4,] 32.24075 -9.660595e+00 -1.301930e+02
1955c1955 < [5,] 91.01106 -71.173035 -1.534147e+01 ---
[5,] 91.01106 -7.117303e+01 -1.534147e+01
1956c1956 < [6,] 60.50231 84.566776 -1.081465e+02 ---
[6,] 60.50231 8.456678e+01 -1.081465e+02
1957c1957 < [7,] 97.14950 7.898148 1.064410e+02 ---
[7,] 97.14950 7.898148e+00 1.064410e+02
1958c1958 < [8,] 76.97594 0.000000 -5.554930e-14 ---
[8,] 76.97594 -2.777465e-14 -5.554930e-14
Testing examples for package 'graphics' comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK Testing examples for package 'stats' comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... 6355c6355 < Grand Mean: 291.5937 ---
Grand Mean: 291.5938
12721c12721 < Murder -0.536 0.418 -0.341 -0.649 ---
Murder -0.536 0.418 -0.341 0.649
12722c12722 < Assault -0.583 0.188 -0.268 0.743 ---
Assault -0.583 0.188 -0.268 -0.743
12723c12723 < UrbanPop -0.278 -0.873 -0.378 -0.134 ---
UrbanPop -0.278 -0.873 -0.378 0.134
14355c14355 < Grand Mean: 291.5937 ---
Grand Mean: 291.5938
15442c15442 < Murder -0.54 0.42 -0.34 -0.65 ---
Murder -0.54 0.42 -0.34 0.65
15443c15443 < Assault -0.58 -0.27 0.74 ---
Assault -0.58 -0.27 -0.74
Testing examples for package 'datasets' comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK Testing examples for package 'methods' comparing 'methods-Ex.Rout' to 'methods-Ex.Rout.save' ... OK Testing examples for package 'grid' comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK Testing examples for package 'splines' comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK Testing examples for package 'stats4' comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK Testing examples for package 'tcltk' Testing examples for package 'compiler' make[2]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule. running strict specific tests running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [eval-etc.Rout] Error 1 running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [simple-true.Rout] Error 1 running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [arith-true.Rout] Error 1 running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [arith.Rout] Error 1 running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [lm-tests.Rout] Error 1 running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [ok-errors.Rout] Error 1 running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [method-dispatch.Rout] Error 1 running code in 'array-subset.R' ... OK comparing 'array-subset.Rout' to './array-subset.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [array-subset.Rout] Error 1 running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [any-all.Rout] Error 1 running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME make[3]: *** [d-p-q-r-tests.Rout] Error 1 make[3]: Target `test-Specific-strict' not remade because of errors. make[2]: *** [test-Specific] Error 2 make[1]: *** [test-all-basics] Error 1 make[1]: Target `check' not remade because of errors. make: *** [check] Error 2 -- BABA Yoshihiko Urban Design Laboratory, Tokyo University TEL: +81 (0)90 1738 7439
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