David Winsemius
> sessionInfo()
R version 2.8.1 Patched (2009-01-07 r47515)
i386-apple-darwin9.6.0
locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] mapproj_1.1-7.2 maps_2.0-40
loaded via a namespace (and not attached):
[1] grid_2.8.1 lattice_0.17-20 tools_2.8.1
Warning message:
In install.packages(c("rgl"), lib = "/Library/Frameworks/R.framework/
Resources/library/", :
installation of package 'rgl' had non-zero exit status
> capabilities()
jpeg png tiff tcltk X11 aqua http/ftp
sockets libxml fifo cledit iconv
TRUE TRUE FALSE TRUE TRUE TRUE TRUE
TRUE TRUE TRUE TRUE TRUE
NLS profmem cairo
TRUE FALSE TRUE
---- intall listing follows----
trying URL 'http://R-Forge.R-project.org/src/contrib/rgl_0.83-751.tar.gz'
Content type 'application/x-gzip' length 1656674 bytes (1.6 Mb)
opened URL
==================================================
downloaded 1.6 Mb
* Installing *source* package 'rgl' ...
checking for gcc... gcc-4.2 -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO
C89... none needed
checking how to run the C preprocessor... gcc-4.2 -arch x86_64 -
std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch x86_64 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g...
(cached) yes
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO
C89... (cached) none needed
checking for libpng-config... yes
configure: using libpng-config
configure: using libpng dynamic linkage
checking for X... no
configure: error: X11 not found but required, configure aborted.
ERROR: configuration failed for package 'rgl'
** Removing '/Library/Frameworks/R.framework/Resources/library/rgl'
** Restoring previous '/Library/Frameworks/R.framework/Resources/
library/rgl'
The downloaded packages are in
/private/var/folders/xS/xSUsVXTIHEiP7OLJg2OXmU+++TI/-Tmp-/Rtmp3Z2KtQ/
downloaded_packages
----end listing----
On Mar 2, 2009, at 4:39 PM, Duncan Murdoch wrote:
> On 3/2/2009 2:48 PM, chaogai wrote:
>> Oops, sorry
>> R version 2.8.1 (2008-12-22)
>> i686-pc-linux-gnu
>> locale:
>> LC_CTYPE
>> =
>> en_US
>> .UTF
>> -8
>> ;LC_NUMERIC
>> =
>> C
>> ;LC_TIME
>> =
>> en_US
>> .UTF
>> -8
>> ;LC_COLLATE
>> =
>> en_US
>> .UTF
>> -8
>> ;LC_MONETARY
>> =
>> C
>> ;LC_MESSAGES
>> =
>> en_US
>> .UTF
>> -8
>> ;LC_PAPER
>> =
>> en_US
>> .UTF
>> -8
>> ;LC_NAME
>> =
>> C
>> ;LC_ADDRESS
>> =C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>> attached base packages:
>> [1] tcltk stats graphics grDevices utils datasets
>> methods
>> [8] base
>> other attached packages:
>> [1] rgl_0.81 svGUI_0.9-44 svSocket_0.9-43 svMisc_0.9-46
>
> 0.81 isn't the current version of rgl on CRAN. Please try that one,
> or even better, the development version on R-forge.
>
> Duncan Murdoch
>> Duncan Murdoch wrote:
>>> On 3/2/2009 2:00 PM, chaogai wrote:
>>>> Whatever it is, it is also happening on my Acer, Suse 11.1, 32
>>>> bits,
>>>> self build R.
>>>
>>> Versions of R and rgl?
>>>
>>> Duncan Murdoch
>>>
>>>>
>>>> Kees
>>>>
>>>> Bo Zhou wrote:
>>>>> Thanks Duncan.
>>>>>
>>>>> I haven't got a chance to try it in windows yet. But I won't be
>>>>> surprised if it's my driver's fault. I had OpenGL problems on this
>>>>> dell laptop before.....
>>>>>
>>>>>
>>>>>> Date: Sun, 1 Mar 2009 18:29:20 -0500
>>>>>> From: murdoch at stats.uwo.ca
>>>>>> To: bozhou1981 at hotmail.com
>>>>>> CC: remkoduursma at gmail.com; r-help at r-project.org
>>>>>> Subject: Re: [R] rgl persp3d bounding box color problem.
>>>>>>
>>>>>> On 01/03/2009 5:54 PM, Bo Zhou wrote:
>>>>>>
>>>>>>> site down......
>>>>>>>
>>>>>>> here is the code
>>>>>>>
>>>>>>> library(rgl)
>>>>>>>
>>>>>>> plot1:
>>>>>>> persp3d(x=1:11,y=1:210,z=matrix(rep(1,11*210),
>>>>>>> 11,210),col=matrix(rep("#FF0000",11*210),11,210))
>>>>>>>
>>>>>>>
>>>>>>> plot2:
>>>>>>> persp3d(x=1:11,y=1:10,z=matrix(rep(1,11*10),
>>>>>>> 11,10),col=matrix(rep("#FF0000",11*10),11,10))
>>>>>>>
>>>>>>>
>>>>>> Works fine on Mac OS 10.5 too. Looks like a bug in your OpenGL
>>>>>> driver...
>>>>>>
>>>>>> Duncan Murdoch
>>>>>>
>>>>>>
>>>>>>
>>>>>>> Thanks!
>>>>>>>
>>>>>>> Bo
>>>>>>>
>>>>>>>> Date: Mon, 2 Mar 2009 09:28:31 +1100
>>>>>>>> Subject: Re: [R] rgl persp3d bounding box color problem.
>>>>>>>> From: remkoduursma at gmail.com
>>>>>>>> To: bozhou1981 at hotmail.com
>>>>>>>>
>>>>>>>> I would not mind trying, but the link no longer works...
>>>>>>>>
>>>>>>>> Remko
>>>>>>>>
>>>>>>>>
>>>>>>>> -------------------------------------------------
>>>>>>>> Remko Duursma
>>>>>>>> Post-Doctoral Fellow
>>>>>>>>
>>>>>>>> Centre for Plant and Food Science
>>>>>>>> University of Western Sydney
>>>>>>>> Hawkesbury Campus
>>>>>>>> Richmond NSW 2753
>>>>>>>>
>>>>>>>> Dept of Biological Science
>>>>>>>> Macquarie University
>>>>>>>> North Ryde NSW 2109
>>>>>>>> Australia
>>>>>>>>
>>>>>>>> Mobile: +61 (0)422 096908
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Mon, Mar 2, 2009 at 8:16 AM, Bo Zhou
>>>>>>>> <bozhou1981 at hotmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Thanks, Duncan.
>>>>>>>>>
>>>>>>>>> What's your platform? Could this be an issues related to my
>>>>>>>>> platform? I'm on Ubuntu 8.10 64bit using cran's R package. I
>>>>>>>>> built rgl package on my machine using install.packages(). I'm
>>>>>>>>> going to give it a try in windows.
>>>>>>>>>
>>>>>>>>> I would be very grateful if anyone using similar setup could
>>>>>>>>> give it a try.
>>>>>>>>>
>>>>>>>>> Thanks,
>>>>>>>>> Bo
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> Date: Sun, 1 Mar 2009 07:03:10 -0500
>>>>>>>>>> From: murdoch at stats.uwo.ca
>>>>>>>>>> To: bozhou1981 at hotmail.com
>>>>>>>>>> CC: r-help at r-project.org
>>>>>>>>>> Subject: Re: [R] rgl persp3d bounding box color problem.
>>>>>>>>>>
>>>>>>>>>> On 28/02/2009 4:20 PM, Bo Zhou wrote:
>>>>>>>>>>
>>>>>>>>>>> Hi guys,
>>>>>>>>>>>
>>>>>>>>>>> I hit on a problem when I use rgl.
>>>>>>>>>>>
>>>>>>>>>>> Could you try to run the code here in this link and see why
>>>>>>>>>>> the first persp3d gives a red bounding box and the second
>>>>>>>>>>> shows black?
>>>>>>>>>>>
>>>>>>>>>> They both show as black on my system.
>>>>>>>>>>
>>>>>>>>>> Duncan Murdoch
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>> http://rafb.net/p/g1i7ur33.html
>>>>>>>>>>>
>>>>>>>>>>> (sorry for not pasting the code here directly but my
>>>>>>>>>>> previous
>>>>>>>>>>> email got filtered by this list so I suspect my code looks
>>>>>>>>>>> like spam to the spam filter)
>>>>>>>>>>>
>>>>>>>>>>> I'm expecting black color to be the right result but the
>>>>>>>>>>> code
>>>>>>>>>>> is virtually same except different data size. Looks like a
>>>>>>>>>>> mem
>>>>>>>>>>> bug to me?
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> BTW you will need to install the rgl package
>>>>>>>>>>>
>>>>>>>>>>> Thanks,
>>>>>>>>>>>
>>>>>>>>>>> Bo
>>>>>>>>>>>
>>>>>>>>>>> _________________________________________________________________
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> [[alternative HTML version deleted]]
>>>>>>>>>>>
>>>>>>>>>>> ______________________________________________
>>>>>>>>>>> R-help at r-project.org mailing list
>>>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>>>>>>>> PLEASE do read the posting guide
>>>>>>>>>>> http://www.R-project.org/posting-guide.html
>>>>>>>>>>> and provide commented, minimal, self-contained, reproducible
>>>>>>>>>>> code.
>>>>>>>>>>>
>>>>>>>>> _________________________________________________________________
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> [[alternative HTML version deleted]]
>>>>>>>>>
>>>>>>>>> ______________________________________________
>>>>>>>>> R-help at r-project.org mailing list
>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>>>>>> PLEASE do read the posting guide
>>>>>>>>> http://www.R-project.org/posting-guide.html
>>>>>>>>> and provide commented, minimal, self-contained, reproducible
>>>>>>>>> code.
>>>>>>>>>
>>>>>>>>>
>>>>>>> _________________________________________________________________
>>>>>>>
>>>>>>>
>>>>>>> [[alternative HTML version deleted]]
>>>>>>>
>>>>>>> ______________________________________________
>>>>>>> R-help at r-project.org mailing list
>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>>>> PLEASE do read the posting guide
>>>>>>> http://www.R-project.org/posting-guide.html
>>>>>>> and provide commented, minimal, self-contained, reproducible
>>>>>>> code.
>>>>>>>
>>>>>
>>>>> _________________________________________________________________
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>>>>> [[alternative HTML version deleted]]
>>>>>
>>>>> ------------------------------------------------------------------------
>>>>>
>>>>>
>>>>> ______________________________________________
>>>>> R-help at r-project.org mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>> PLEASE do read the posting guide
>>>>> http://www.R-project.org/posting-guide.html
>>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>>
>>>>
>>>> ______________________________________________
>>>> R-help at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>> PLEASE do read the posting guide
>>>> http://www.R-project.org/posting-guide.html
>>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.