On Jan 15, 2018, at 11:25 AM, Manuel Sp?nola <mspinola10 at gmail.com> wrote:
I am still having problems updating some packages, for example,
sf
Hmisc
rms
mgcv
RcmdrMisc
Same messages that I showed in my first email.
Manuel
2018-01-11 12:17 GMT-06:00 Simon Urbanek <simon.urbanek at r-project.org>:
Manuel,
the archiving on CRAN has changed recently which broke the updates so recently the update for macOS packages have been suspended. Hence some most recent binaries is not available yet - it should be up by tomorrow.
Cheers,
Simon
On Jan 11, 2018, at 12:26 PM, Manuel Sp?nola <mspinola10 at gmail.com> wrote:
Dear list members,
When trying updating some packages in MacOS High Sierra 10.13 (R 3.4.2)
some packages, as "sf", fails:
There is a binary version available but the source version is later:
binary source needs_compilation
sf 0.5-5 0.6-0 TRUE
Do you want to install from sources the package which needs compilation?
y/n: y
installing the source package ?sf?
trying URL 'https://cran.rstudio.com/src/contrib/sf_0.6-0.tar.gz'
Content type 'application/x-gzip' length 7399611 bytes (7.1 MB)
==================================================
downloaded 7.1 MB
Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
unknown timezone 'default/America/Costa_Rica'
* installing *source* package ?sf? ...
** package ?sf? successfully unpacked and MD5 sums checked
configure: CC: clang
configure: CXX: clang++
checking for gdal-config... no
no
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ?sf?
* removing
?/Library/Frameworks/R.framework/Versions/3.4/Resources/library/sf?
* restoring previous
?/Library/Frameworks/R.framework/Versions/3.4/Resources/library/sf?
Warning in install.packages :
installation of package ?sf? had non-zero exit status
The downloaded source packages are in
?/private/var/folders/gf/vwlbzml90wv7cs2r4v00wg_m0000gn/T/RtmpbmvcCh/downloaded_packages?
Any solution to this problem?
Manuel
--
*Manuel Sp?nola, Ph.D.*
Instituto Internacional en Conservaci?n y Manejo de Vida Silvestre
Universidad Nacional
Apartado 1350-3000
Heredia
COSTA RICA
mspinola at una.cr <mspinola at una.ac.cr>
mspinola10 at gmail.com
Tel?fono: (506) 8706 - 4662
Personal website: Lobito de r?o <https://sites.google.com/site/lobitoderio/>
Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/>
[[alternative HTML version deleted]]