Bioconductor - reposTools errors

start with "sudo R"

On Friday, Jun 6, 2003, at 09:48 US/Pacific, Dennis A. Wolf wrote:

Thanks Jan for the quick response! The library seemed to load okay,  
however I got a couple of warnings:

Warning messages:
1: NAs introduced by coercion
2: Incorrect permissions to edit package database,  
/usr/local/lib/R/library/liblisting.Rda in: save.locLib(locLibDf,  
lib[i])

Should I be concerned about them?

Thanks again!

Dennis A. Wolf, Ph.D.
Computer Sciences and Mathematics Division
Oak Ridge National Laboratory
POB 2008, Building 6011, MS 6418
Oak Ridge, TN  37831-6418

phone: (865) 574-6326
fax:   (865) 576-3513
email: wolfda@ornl.gov

On Friday, Jun 6, 2003, at 12:29 US/Eastern, Jan de Leeuw wrote:

remove

/usr/local/lib/R/library/R.css
/usr/local/lib/R/library/liblisting.Rda

and try again

On Friday, Jun 6, 2003, at 08:52 US/Pacific, Dennis A. Wolf wrote:

I am trying to use the Bioconductor package included in the R-1.7.0  
package post 05-19-03 on http://gifi.stat.ucla.edu/pub but am  
getting the following error:

library(Biobase)

Welcome to Bioconductor
         Vignettes contain introductory material.  To view,
         simply type: openVignette()
         For details on reading vignettes, see
         the openVignette help page.
Creating a new generic function for "summary" in package
reposTools

Synching your local package management information ...
Error in if (e1[i] != e2[i]) return(TRUE) :
        missing value where TRUE/FALSE needed
Error in firstlib(which.lib.loc, package) :
        Package reposTools required
Error in library(Biobase) : .First.lib failed

Can anyone shed some light on what is going wrong? Thanks!


Dennis A. Wolf, Ph.D.
Computer Sciences and Mathematics Division
Oak Ridge National Laboratory
POB 2008, Building 6011, MS 6418
Oak Ridge, TN  37831-6418

phone: (865) 574-6326
fax:   (865) 576-3513
email: wolfda@ornl.gov

===
Jan de Leeuw; Professor and Chair, UCLA Department of Statistics;
Editor: Journal of Multivariate Analysis, Journal of Statistical  
Software
US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554
phone (310)-825-9550;  fax (310)-206-5658;  email:  
deleeuw@stat.ucla.edu
homepage: http://gifi.stat.ucla.edu
  
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          No matter where you go, there you are. --- Buckaroo Banzai
                   http://gifi.stat.ucla.edu/sounds/nomatter.au
  
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===
Jan de Leeuw; Professor and Chair, UCLA Department of Statistics;
Editor: Journal of Multivariate Analysis, Journal of Statistical  
Software
US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554
phone (310)-825-9550;  fax (310)-206-5658;  email:  
deleeuw@stat.ucla.edu
homepage: http://gifi.stat.ucla.edu
  
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--------------------------
          No matter where you go, there you are. --- Buckaroo Banzai
                   http://gifi.stat.ucla.edu/sounds/nomatter.au
  
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