Message-ID: <BBE5FE0C-B051-487B-8DC6-5BDC8A7E870B@r-project.org>
Date: 2006-04-20T16:59:15Z
From: Simon Urbanek
Subject: plier source compilation error related to dylib
In-Reply-To: <6A8AE244-AF27-4DD2-B346-8181861A3344@mac.com>
On Apr 20, 2006, at 12:47 PM, S Kong wrote:
> Hello, I was trying to install BioConductor plier package under R64
> of Simon's. ( Quad G5 + 10.4.6 + Xcode 2.2.1 + powerpc-apple-
> darwin8-gcc-4.0.1) The plier package is an expression index
> calculation algorithm for Affymetrix microarray In the end, I gave
> up with the BioConductor plier package and started with Affymetrix
> plier source code to build .so. But errors were that dylib could
> not be found for libgfortran.0.dylib, ibgcc_s.1.0.dylib, and
> libreadline.5.dylib. Those dylib are located at /usr/local/lib64/R/
> lib/
> Could anyone help me with this?
> Thanks!!!
>
> % R64 CMD SHLIB affyplier.cpp plieralg.cpp plier_impl.cpp rwrapper.cpp
> g++ -bundle -flat_namespace -undefined suppress -m64 -L/usr/local/lib
> -L/usr/local/lib64/R/lib -o affyplier.so affyplier.o plieralg.o
> plier_impl.o rwrapper.o -L/usr/local/lib64/R/lib -lR
> ld64 warning: in affyplier.o, file does not contain requested
> architecture
^^^- this is the actual error - it seems that something went wrong
during the compilation, but you omitted that part, so we can't see
what that was. Please send me the full output of the build process.
Cheers,
Simon