Skip to content
Prev 7126 / 15075 Next

problems with X11 in R 2.11.0

On May 3, 2010, at 3:37 PM, steven mosher wrote:

            
(Calling X11() did not really "crash" my machine. but it reported a  
serious error and asked me to save and restart.

otools reports my version in that directory is 36.0.0.

	/usr/X11/lib/libpng12.0.dylib (compatibility version 36.0.0, current  
version 36.0.0)

(Of course, it also lists about 10 other locations as well. Should I  
have posted the entire output? )

I install all updates when they are pushed. I just did a Software  
Update of my 10.5.8 machine and it says I am up-to-date.

Does it matter that I set a fairly long Sys.env path in my .Rprofile  
and that "/usr/X11/lib" is not in that path?

Sys.setenv(PATH="/opt/local/bin:/opt/local/sbin:/sw/bin:/sw/sbin:/usr/ 
bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin:/usr/ 
X11R6/bin")

For the record, I am not having problems with R or RGL which I believe  
requires X11 for some of its display. And capabilities() thinks I have  
X11:

 > capabilities()
     jpeg      png     tiff    tcltk      X11     aqua http/ftp   
sockets   libxml
     TRUE     TRUE     TRUE     TRUE     TRUE     TRUE     TRUE      
TRUE     TRUE
     fifo   cledit    iconv      NLS  profmem    cairo
     TRUE     TRUE     TRUE     TRUE     TRUE     TRUE


sessionInfo()
R version 2.10.1 RC (2009-12-09 r50695)

### I don't really want to update to 2.11.0 because of the Hmisc  
incompatibility. I use Harrell's packages extensively.

x86_64-apple-darwin9.8.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] lattice_0.18-3

loaded via a namespace (and not attached):
[1] grid_2.10.1  tools_2.10.1
David Winsemius, MD
West Hartford, CT