On Wed, Apr 10, 2013 at 3:38 PM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
Not sure if this is a bug or not, but there is different behavior
between R.app and command-line R as regards
DYLD_FALLBACK_LIBRARY_PATH.
If I start R.app and try and load the BioC package 'impute':
source('http://bioconductor.org/biocLite.R")
biocLite("impute")
library(impute)
I get:
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Library/Frameworks/R.framework.release/Versions/3.0/Resources/library/impute/libs/impute.so':
dlopen(/Library/Frameworks/R.framework.release/Versions/3.0/Resources/library/impute/libs/impute.so,
6): Library not loaded: /usr/local/lib/libgfortran.2.dylib
Referenced from:
/Library/Frameworks/R.framework.release/Versions/3.0/Resources/library/impute/libs/impute.so
Reason: image not found
Error: package or namespace load failed for 'impute'
However, the package loads fine in command-line R.
I found that if I start R.app like this:
export DYLD_FALLBACK_LIBRARY_PATH=/Library/Frameworks/R.framework/Resources/lib
open /Applications/R.app
Then I can load the impute package.
So can R.app set this variable when it starts? Or is there another
solution I need to look at?
PS, sessionInfo() is R version 3.0.0 (2013-04-03) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] impute_1.34.0 BiocInstaller_1.10.0 loaded via a namespace (and not attached): [1] tools_3.0.0 Dan
Thanks, Dan
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac