Hello,
I have R for Mac OS X Aqua GUI Version 1.14 with R 2.2.0 Framework. I
got following warnings when installing "qtl" package 1.01-9 from CRAN
(sources) on the austrian mirror:
warning 1:
ld: warning multiple definitions of symbol _signgam
/Library/Frameworks/R.framework/../R.framework/R(lgamma.lo)
definition of _signgam
/usr/lib/libSystem.dylib(gamma9.o) definition of _signgam
warning 2:
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LC_ALL = (unset),
LANG = "en_CZ.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
warning 3:
chmod: /Library/Frameworks/R.framework/Versions/2.2/Resources/library/
R.css: Operation not permitted
Two of them - warnings 2 and 3 - I get quite often, also with other
packages. Is this a real problem, packages seem to work otherwise?
Thank
you much.
Regards, Radek
Radek Blatny, MSc.
Institute of Molecular Genetics
Department of Mouse Molecular Genetics (Jiri Forejt unit)
Czech Academy of Sciences
Videnska 1083
142 20, Prague
Czech Republic
Tel. (+420) 241 062 256
Fax (+420) 241 062 154
http://www.img.cas.cz/mmg
email: blatny at biomed.cas.cz
Skype name: blatny
warnings when installing "qtl" package
2 messages · Radek Blatny, Simon Urbanek
1 day later
Radku, warning 1 is ok, R re-defines the signgam function that is also provided by the system library warning 2 comes from the fact that you are using an unusual combination of settings that generates an invalid locale not supported by the system (english language with czech locale)*. You can select czech language in the "System Preferences"- >"International"->"Language" (you will have to click on "Edit List.." to make "?e?tina" visible in the list) - that will lead to cs_CZ.UTF-8 locale which is valid. Another alternative is to force the R GUI to select other locale independently of your system settings, so you could use for example defaults write org.R-project.R force.LANG en_US.UTF-8 or defaults write org.R-project.R force.LANG cs_CZ.UTF-8 or any other valid locale (make sure it's UTF-8, though). Cheers, ?imon * - in a sense this is R GUI's fault, but there is no canonical locale defined in OS X, so all we can do is guess and we're combining the language and locale settings to create one canonical locale. This won't work for combinations like yours, because then we need separate LC_ALL and LANG. This is why we recommend manual override with force.LANG in the defaults in such cases. We have to specify a locale, because R GUI can only handle UTF-8 encoding.
On Feb 23, 2006, at 6:29 AM, Radek Blatny wrote:
Hello,
I have R for Mac OS X Aqua GUI Version 1.14 with R 2.2.0 Framework. I
got following warnings when installing "qtl" package 1.01-9 from CRAN
(sources) on the austrian mirror:
warning 1:
ld: warning multiple definitions of symbol _signgam
/Library/Frameworks/R.framework/../R.framework/R(lgamma.lo)
definition of _signgam
/usr/lib/libSystem.dylib(gamma9.o) definition of _signgam
warning 2:
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LC_ALL = (unset),
LANG = "en_CZ.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
warning 3:
chmod: /Library/Frameworks/R.framework/Versions/2.2/Resources/
library/
R.css: Operation not permitted
Two of them - warnings 2 and 3 - I get quite often, also with other
packages. Is this a real problem, packages seem to work otherwise?
Thank
you much.
Regards, Radek
Radek Blatny, MSc.
Institute of Molecular Genetics
Department of Mouse Molecular Genetics (Jiri Forejt unit)
Czech Academy of Sciences
Videnska 1083
142 20, Prague
Czech Republic
Tel. (+420) 241 062 256
Fax (+420) 241 062 154
http://www.img.cas.cz/mmg
email: blatny at biomed.cas.cz
Skype name: blatny
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