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crash on canceled "Open in Editor" operation

4 messages · Parlamis Franklin, Simon Urbanek, Sean Wiltshire

#
if i hit the "Open in Editor" toolbar button, but then cancel out of  
the dialog box, R crashes.

franklin parlamis

GUI Version 1.17-pre (3779)

 > version
                _
platform       powerpc-apple-darwin8.7.0
arch           powerpc
os             darwin8.7.0
system         powerpc, darwin8.7.0
status         beta
major          2
minor          4.0
year           2006
month          09
day            22
svn rev        39471
language       R
version.string R version 2.4.0 beta (2006-09-22 r39471)
#
On Sep 28, 2006, at 12:59 AM, Parlamis Franklin wrote:

            
Please always include a crash report when R 'crashed' -  we cannot do  
anything without it. I cannot reproduce the problem, either.

Thanks,
Simon
#
On Sep 28, 2006, at 12:59 AM, Parlamis Franklin wrote:

            
I have found a bug that may be related to this - please test  
tonight's release 3825.
Thanks for testing the most recent GUI and R! This bug was introduced  
only recently so without your help we wouldn't spot it until it's too  
late.

Thanks,
Simon
#
Hi all,
I've been having some problems getting the bioconductor library  
'EBImage' installed and running properly. It depends on imagemagick  
and I think I have that installed properly, I used fink  imagemagick- 
dev    6.1.8-3 without any obvious problems. I run 10.4.7, and I was  
using xcode 2.0 with R version 2.4.0 beta (2006-09-24 r39502),  
powerpc-apple-darwin8.7.0

This is the package:
http://www.bioconductor.org/packages/1.9/bioc/html/EBImage.html

Here is what happens when I try to install:

root# R CMD install /Users/swilts/Desktop/EBImage_1.3.105.tar.gz*  
Installing *source* package 'EBImage' ...

[snip]
/usr/bin/libtool: unknown option character `m' in: -macosx_version_min
Usage: /usr/bin/libtool -static [-] file [...] [-filelist listfile 
[,dirname]] [-arch_only arch] [-sacLT]
Usage: /usr/bin/libtool -dynamic [-] file [...] [-filelist listfile 
[,dirname]] [-arch_only arch] [-o output] [-install_name name] [- 
compatibility_version #] [-current_version #] [-seg1addr 0x#] [- 
segs_read_only_addr 0x#] [-segs_read_write_addr 0x#] [-seg_addr_table  
<filename>] [-seg_addr_table_filename <file_system_path>] [-all_load]  
[-noall_load]
make: *** [EBImage.so] Error 1
chmod: /Library/Frameworks/R.framework/Versions/2.4/Resources/library/ 
EBImage/libs/ppc/*: No such file or directory

So, I tried installing glibtool using fink, this didn't seem to fix  
anything, then I heard from a friend that maybe getting xcode 2.4  
would fix libtool, I signed up and downloaded that, tried again.
Now, the package seems to finish compiling but when I try to load it  
into R I get this:

 > library(EBImage)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
         unable to load shared library '/Library/Frameworks/ 
R.framework/Resources/library/EBImage/libs/ppc/EBImage.so':
   dlopen(/Library/Frameworks/R.framework/Resources/library/EBImage/ 
libs/ppc/EBImage.so, 6): Symbol not found: __ZTIN6Magick9ExceptionE
   Referenced from: /Library/Frameworks/R.framework/Resources/library/ 
EBImage/libs/ppc/EBImage.so
   Expected in: dynamic lookup
Error: package/namespace load failed for 'EBImage'
 >

Has anyone else installed this package on a mac successfully? Any  
pointers even if you haven't? Is this still a problem with libtool  
not working properly? One friend suggested I replace libtool with  
glibtool, is that safe?

Best,
Sean