For the past few days, attempts to build R 2.7.0 from source
on macosx 10.4.11 have run into:
ld: multiple definitions of symbol _getQuartzAPI
devQuartz.o definition of _getQuartzAPI in section (__TEXT,__text)
../../../../lib/libR.dylib(single module) definition of _getQuartzAPI
/usr/bin/libtool: internal link edit command failed
make[5]: *** [grDevices.so] Error 1
make[4]: *** [all] Error 2
make[3]: *** [all] Error 1
make[2]: *** [R] Error 1
make[1]: *** [R] Error 1
make: *** [R] Error 1
W0034619:~/Work/ExternalSoft/R-devel stvjc$ gcc -v
Using built-in specs.
Target: i686-apple-darwin8
Configured with: ../gcc-4.0.3/configure --prefix=/usr/local/gcc4.0 --disable-che
cking --enable-languages=c,objc,c++,f95 --program-transform-name=/^[cg][^.-]*$/s
/$/-4.0/ --build=i686-apple-darwin8 --with-arch=pentium-m --with-tune=prescott -
-program-prefix= --host=i686-apple-darwin8 --target=i686-apple-darwin8
Thread model: posix
gcc version 4.0.3
W0034619:~/Work/ExternalSoft/R-devel stvjc$ gfortran -v
Using built-in specs.
Target: i686-apple-darwin8
Any suggestions on how to get around this? Thanks
---
Vince Carey, PhD
Assoc. Prof Med (Biostatistics)
Harvard Medical School
Channing Laboratory - ph 6175252265 fa 6177311541
181 Longwood Ave Boston MA 02115 USA
stvjc at channing.harvard.edu
The information transmitted in this electronic communica...{{dropped:10}}
persistent problem with devQuartz.o bldg devel from source
4 messages · Vincent Carey, Simon Urbanek
Vince, can you send me the full output, please? The actual command is unfortunately missing from your post. It builds fine for me as you can see on http://r.research.att.com/ Please make sure you are doing a fresh checkout+build. Thanks, Simon
On Feb 20, 2008, at 11:52 AM, Vincent Carey 525-2265 wrote:
For the past few days, attempts to build R 2.7.0 from source
on macosx 10.4.11 have run into:
ld: multiple definitions of symbol _getQuartzAPI
devQuartz.o definition of _getQuartzAPI in section (__TEXT,__text)
../../../../lib/libR.dylib(single module) definition of _getQuartzAPI
/usr/bin/libtool: internal link edit command failed
make[5]: *** [grDevices.so] Error 1
make[4]: *** [all] Error 2
make[3]: *** [all] Error 1
make[2]: *** [R] Error 1
make[1]: *** [R] Error 1
make: *** [R] Error 1
W0034619:~/Work/ExternalSoft/R-devel stvjc$ gcc -v
Using built-in specs.
Target: i686-apple-darwin8
Configured with: ../gcc-4.0.3/configure --prefix=/usr/local/gcc4.0 --
disable-che
cking --enable-languages=c,objc,c++,f95 --program-transform-name=/
^[cg][^.-]*$/s
/$/-4.0/ --build=i686-apple-darwin8 --with-arch=pentium-m --with-
tune=prescott -
-program-prefix= --host=i686-apple-darwin8 --target=i686-apple-darwin8
Thread model: posix
gcc version 4.0.3
W0034619:~/Work/ExternalSoft/R-devel stvjc$ gfortran -v
Using built-in specs.
Target: i686-apple-darwin8
Any suggestions on how to get around this? Thanks
---
Vince Carey, PhD
Assoc. Prof Med (Biostatistics)
Harvard Medical School
Channing Laboratory - ph 6175252265 fa 6177311541
181 Longwood Ave Boston MA 02115 USA
stvjc at channing.harvard.edu
The information transmitted in this electronic communica...{{dropped:
10}}
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
this is a totally fresh checkout -- simply did rsync-recommended in tools, ./configure --enable-R-shlib --with-tcltk make it fails at: gcc -std=gnu99 -dynamiclib -flat_namespace -undefined suppress -single_module -m ultiply_defined suppress -L/usr/local/lib -o grDevices.so chull.o devNull.o devP icTeX.o devPS.o devQuartz.o init.o qdBitmap.o qdPDF.o qdCocoa.o -framework AppK it -L../../../../lib -lR -dylib_file libRblas.dylib:../../../../lib/libRblas.dy lib ld: multiple definitions of symbol _getQuartzAPI devQuartz.o definition of _getQuartzAPI in section (__TEXT,__text) ../../../../lib/libR.dylib(single module) definition of _getQuartzAPI /usr/bin/libtool: internal link edit command failed make[5]: *** [grDevices.so] Error 1 make[4]: *** [all] Error 2 make[3]: *** [all] Error 1 make[2]: *** [R] Error 1 make[1]: *** [R] Error 1 make: *** [R] Error 1 W0034619:~/Work/ExternalSoft/fresh stvjc$ svn up At revision 44551. i wonder if my xcode tools are out of date but i do not know how to determine the version. --- Vince Carey, PhD Assoc. Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 181 Longwood Ave Boston MA 02115 USA stvjc at channing.harvard.edu
On Wed, 20 Feb 2008, Simon Urbanek wrote:
Vince, can you send me the full output, please? The actual command is unfortunately missing from your post. It builds fine for me as you can see on http://r.research.att.com/ Please make sure you are doing a fresh checkout+build. Thanks, Simon On Feb 20, 2008, at 11:52 AM, Vincent Carey 525-2265 wrote:
For the past few days, attempts to build R 2.7.0 from source
on macosx 10.4.11 have run into:
ld: multiple definitions of symbol _getQuartzAPI
devQuartz.o definition of _getQuartzAPI in section (__TEXT,__text)
../../../../lib/libR.dylib(single module) definition of _getQuartzAPI
/usr/bin/libtool: internal link edit command failed
make[5]: *** [grDevices.so] Error 1
make[4]: *** [all] Error 2
make[3]: *** [all] Error 1
make[2]: *** [R] Error 1
make[1]: *** [R] Error 1
make: *** [R] Error 1
W0034619:~/Work/ExternalSoft/R-devel stvjc$ gcc -v
Using built-in specs.
Target: i686-apple-darwin8
Configured with: ../gcc-4.0.3/configure --prefix=/usr/local/gcc4.0 --
disable-che
cking --enable-languages=c,objc,c++,f95 --program-transform-name=/
^[cg][^.-]*$/s
/$/-4.0/ --build=i686-apple-darwin8 --with-arch=pentium-m --with-
tune=prescott -
-program-prefix= --host=i686-apple-darwin8 --target=i686-apple-darwin8
Thread model: posix
gcc version 4.0.3
W0034619:~/Work/ExternalSoft/R-devel stvjc$ gfortran -v
Using built-in specs.
Target: i686-apple-darwin8
Any suggestions on how to get around this? Thanks
---
Vince Carey, PhD
Assoc. Prof Med (Biostatistics)
Harvard Medical School
Channing Laboratory - ph 6175252265 fa 6177311541
181 Longwood Ave Boston MA 02115 USA
stvjc at channing.harvard.edu
The information transmitted in this electronic communica...{{dropped:
10}}
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
The information transmitted in this electronic communica...{{dropped:10}}
On Feb 20, 2008, at 2:58 PM, Vincent Carey 525-2265 wrote:
this is a totally fresh checkout -- simply did rsync-recommended in tools, ./configure --enable-R-shlib --with-tcltk make it fails at: gcc -std=gnu99 -dynamiclib -flat_namespace -undefined suppress - single_module -m ultiply_defined suppress -L/usr/local/lib -o grDevices.so chull.o devNull.o devP icTeX.o devPS.o devQuartz.o init.o qdBitmap.o qdPDF.o qdCocoa.o - framework AppK it -L../../../../lib -lR -dylib_file libRblas.dylib:../../../../lib/ libRblas.dy lib ld: multiple definitions of symbol _getQuartzAPI devQuartz.o definition of _getQuartzAPI in section (__TEXT,__text) ../../../../lib/libR.dylib(single module) definition of _getQuartzAPI /usr/bin/libtool: internal link edit command failed make[5]: *** [grDevices.so] Error 1 make[4]: *** [all] Error 2 make[3]: *** [all] Error 1 make[2]: *** [R] Error 1 make[1]: *** [R] Error 1 make: *** [R] Error 1 W0034619:~/Work/ExternalSoft/fresh stvjc$ svn up At revision 44551. i wonder if my xcode tools are out of date
It is highly likely, because flat namespace is used only when the linker doesn't resolve dynamic symbols correctly (old Xcode had that problem). Nonetheless it exposes a potential problem on older systems, so thanks for the report - I'll address the issue ...
but i do not know how to determine the version.
Start Xcode, click on "Xcode" -> "About Xcode". There are many other indirect ways - e.g. compiler build number (2.5=5531) or xcodebuild - version (2.5=798.0). Cheers, Simon
On Wed, 20 Feb 2008, Simon Urbanek wrote:
Vince, can you send me the full output, please? The actual command is unfortunately missing from your post. It builds fine for me as you can see on http://r.research.att.com/ Please make sure you are doing a fresh checkout+build. Thanks, Simon On Feb 20, 2008, at 11:52 AM, Vincent Carey 525-2265 wrote:
For the past few days, attempts to build R 2.7.0 from source
on macosx 10.4.11 have run into:
ld: multiple definitions of symbol _getQuartzAPI
devQuartz.o definition of _getQuartzAPI in section (__TEXT,__text)
../../../../lib/libR.dylib(single module) definition of
_getQuartzAPI
/usr/bin/libtool: internal link edit command failed
make[5]: *** [grDevices.so] Error 1
make[4]: *** [all] Error 2
make[3]: *** [all] Error 1
make[2]: *** [R] Error 1
make[1]: *** [R] Error 1
make: *** [R] Error 1
W0034619:~/Work/ExternalSoft/R-devel stvjc$ gcc -v
Using built-in specs.
Target: i686-apple-darwin8
Configured with: ../gcc-4.0.3/configure --prefix=/usr/local/gcc4.0
--
disable-che
cking --enable-languages=c,objc,c++,f95 --program-transform-name=/
^[cg][^.-]*$/s
/$/-4.0/ --build=i686-apple-darwin8 --with-arch=pentium-m --with-
tune=prescott -
-program-prefix= --host=i686-apple-darwin8 --target=i686-apple-
darwin8
Thread model: posix
gcc version 4.0.3
W0034619:~/Work/ExternalSoft/R-devel stvjc$ gfortran -v
Using built-in specs.
Target: i686-apple-darwin8
Any suggestions on how to get around this? Thanks
---
Vince Carey, PhD
Assoc. Prof Med (Biostatistics)
Harvard Medical School
Channing Laboratory - ph 6175252265 fa 6177311541
181 Longwood Ave Boston MA 02115 USA
stvjc at channing.harvard.edu
The information transmitted in this electronic communica...
{{dropped:
10}}
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