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upgrade to Mavericks

5 messages · Dasapta Erwin Irawan, Richard M. Heiberger, Stefan Evert +2 more

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Dear Rich,

I have several students that report problem in one of our R package 
installation after upgrading their macs to Mavericks.

One of the package, Hydromad (for hydrological modeling), have to be 
installed, with several terminal script. 

Hopefully your upgrade to Mavericks won't trouble you in your R working 
environment.   

regards,
Erwin
On Saturday, 29 March 2014 01:54:11 UTC+11, Richard M. Heiberger wrote:
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Thank you to all who replied.

I did accept the upgrade to Mavericks last week.  In retrospect I think it
was a mistake for me.  Most of the changes are not relevant to my
workflow.  One was an improvement.  One was a big negative.

The improvement is the handling of a secondary display screen.
The Desktop on that screen is now independent of the Desktops on the main
screen.  The Desktop on the secondary screen is retained when I unplug the
secondary screen and then plug it back in.

There are two big negatives is how Preview handles revision to my
pdflatex documents.

Previously (OS X Lion), when I ran pdflatex, the pdf file was revised with
the display showing the same page and the same positioning on the page.
Now (Mavericks) the display jumps to the top left corner of the current page.
Since I keep the window focussed only on the part of the page with text,
that means the top and left margins dominate the new display.  My
workaround is to construct an if statement that sets the margins to 0
when I am in revision mode and gives them normal values otherwise.

The other negative is that yellow stickies now appear in a Comic font instead
of a sedate font.  Also, the alignment between the left marginal column of
yellow stickies and their location in the body of the document is broken.
clicking on the page number in the marginal listing moves the document
to the right page.  But clicking on the sticky itself does not move the marginal
listing to the matching sticky.

An even more serious problem, and I don't know if this is Mavericks-specific
or more general to OS X, is that several R packages no longer work with
the released R-3.1.0.  As of ":Last updated on 2014-04-25 04:47:05.",
latticeExtra gives an error with r-devel-osx-x86_64-gcc and a warning with
r-release-osx-x86_64-mavericks.

I reverted back to R-3.0.3.  I will try again with the R-patched when CRAN
shows all the packages I use are checking without warnings.

Rich

On Thu, Apr 24, 2014 at 6:27 PM, Dasapta Erwin Irawan
<d.erwin.irawan at gmail.com> wrote:
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On 25 Apr 2014, at 05:15, Richard M. Heiberger <rmh at temple.edu> wrote:

            
Hm, this never worked for me properly with Preview, that's why I use TexShop as a PDF previewer.  You can just open the PDF file in TexShop, and configure the "Preview" settings to use "Automatic Preview Update".

-- Stefan
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Skim also works nicely when a PDF is updated by another app.

Regards,

Tom
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On Apr 24, 2014, at 10:15 PM, Richard M. Heiberger <rmh at temple.edu> wrote:

            
Rich,

On this issue, presumably you installed the Mavericks build of R 3.1.0. 

If you install the Snow Leopard build instead, this will be a non-issue.

There are some CRAN packages that do not yet pass testing using the Mavericks R build and so will be unavailable to install as binaries yet.

This post from Prof Ripley earlier this week may be helpful:

  https://stat.ethz.ch/pipermail/r-sig-mac/2014-April/010835.html

Regards,

Marc Schwartz
<snip>