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R crashes on preferences screen
10 messages · Brandon Hurr, John Magnotti, Rainer M Krug +2 more
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I removed my current R.app and installed the one at: http://r.research.att.com/#GUI R-3.0-branch-snowleopard-signed.pkg but I still get an immediate crash when I 1) open the preferences window and 2) click any of the icons in the main "Show All" screen (but not the tabs) I also noticed that switching away from either the Color or the Syntax tab briefly flashes (open then close) the color wheel selection dialog
sessionInfo()
R version 3.0.2 Patched (2013-11-04 r64155) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Is there any other specific information that would help? Thanks, John
On Wed, Nov 6, 2013 at 10:12 AM, Brandon Hurr <bhive01 at gmail.com> wrote:
Robert, I never could reproduce what Brian, John or Ranier were seeing with my install (downloaded from http://r.research.att.com/ . Perhaps they could chime back in and give you more details. I'm now running Mavericks and still cannot replicate. R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Brandon On Wed, Nov 6, 2013 at 12:13 AM, Robert J Goedman <goedman at icloud.com>wrote:
Brandon, Do you still see this problem? Are you using Simon's build? Regards, Rob J. Goedman goedman at icloud.com On Jan 2, 2013, at 3:28 AM, Prof Brian Ripley <ripley at stats.ox.ac.uk> wrote: On 01/01/2013 17:48, Robert J Goedman wrote: Thanks for taking a look. I'll dig a bit further after getting back home tomorrow. It only happens through 'Apple-,' and is then not limited to just the Startup preferences (contrary to what I thought earlier). There is a bug report, PR#15017, related to this that we also have not been able to reproduce. Rob J. Goedman goedman at icloud.com <mailto:goedman at icloud.com <goedman at icloud.com>> On Jan 1, 2013, at 10:01 AM, Prof Brian Ripley <ripley at stats.ox.ac.uk <mailto:ripley at stats.ox.ac.uk <ripley at stats.ox.ac.uk>>> wrote: Sorry, cannot reproduce (with Simon's build or mine, on Lion). Brian On 31/12/2012 19:37, Robert J Goedman wrote: Simon & Brian, Surely this is not high on your minds today, but I did notice an issue with R.app. Using below versions of R-3.0 and the Lion64 version of R.app I noticed that by immediately invoking the Startup preferences. e.g. by Command/Apple-, R.app will segfault: *** caught segfault *** address 0x10121d000, cause 'memory not mapped' ... Above route seems to always create the crash. I've seen a few other occurrences, always with the Startup preferences screen not being mapped, but less reproducible. Same behavior in Simon's build as in my own build of R.app. A reasonable work around is to get there through the Set Colors icon. I'm on OSX8.3 preview 3 and using Xcode 4.6 dp4. And using the CRAN version of R, did not yet build R myself as outlined in the Install file. Happy New Year, regards, Rob J. Goedman goedman at icloud.com <mailto:goedman at icloud.com <goedman at icloud.com>> ------------ my own build---------------------------- R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered Consequences" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] [Workspace restored from /Users/rob/Projects/.RData] [History restored from /Users/rob/Projects/.Rapp.history] sessionInfo() R Under development (unstable) (2012-12-30 r61489) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base -------------R.app from Simon--------------------------------------------- R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered Consequences" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] [Workspace restored from /Users/rob/Projects/.RData] [History restored from /Users/rob/Projects/.Rapp.history] sessionInfo() R Under development (unstable) (2012-12-30 r61489) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base -- Brian D. Ripley, ripley at stats.ox.ac.uk <mailto:ripley at stats.ox.ac.uk<ripley at stats.ox.ac.uk>
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 On Oct 2, 2013, at 6:09 AM, Brandon Hurr <bhive01 at gmail.com> wrote: I cannot reproduce on my mac mini (2011). OS X 10.8.5. R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base On Wed, Oct 2, 2013 at 2:03 PM, John Magnotti <john.magnotti at gmail.com
wrote:
Going to the preferences screen in R.app (Command + , or R->preferences) and selecting any of the icons causes R to crash with a segfault. If I click any the tabs at the top of the preferences window R doesn't crash, but if I go back to the "show all" tab and choose an option it causes an immediate failure. I'm running OS X 10.8.5, sessionInfo pasted below Thoughts? John sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
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I have to confirm both, the crash and the flashing of the colour wheel.
sessionInfo()
R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
version
_ platform x86_64-apple-darwin10.8.0 arch x86_64 os darwin10.8.0 system x86_64, darwin10.8.0 status major 3 minor 0.2 year 2013 month 09 day 25 svn rev 63987 language R version.string R version 3.0.2 (2013-09-25) nickname Frisbee Sailing
Cheers, Rainer
On 11/07/13, 02:17 , John Magnotti wrote:
I removed my current R.app and installed the one at: http://r.research.att.com/#GUI R-3.0-branch-snowleopard-signed.pkg but I still get an immediate crash when I 1) open the preferences window and 2) click any of the icons in the main "Show All" screen (but not the tabs) I also noticed that switching away from either the Color or the Syntax tab briefly flashes (open then close) the color wheel selection dialog
sessionInfo()
R version 3.0.2 Patched (2013-11-04 r64155) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Is there any other specific information that would help? Thanks, John On Wed, Nov 6, 2013 at 10:12 AM, Brandon Hurr <bhive01 at gmail.com> wrote:
Robert, I never could reproduce what Brian, John or Ranier were seeing with my install (downloaded from http://r.research.att.com/ . Perhaps they could chime back in and give you more details. I'm now running Mavericks and still cannot replicate. R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Brandon On Wed, Nov 6, 2013 at 12:13 AM, Robert J Goedman <goedman at icloud.com>wrote:
Brandon, Do you still see this problem? Are you using Simon's build? Regards, Rob J. Goedman goedman at icloud.com On Jan 2, 2013, at 3:28 AM, Prof Brian Ripley <ripley at stats.ox.ac.uk> wrote: On 01/01/2013 17:48, Robert J Goedman wrote: Thanks for taking a look. I'll dig a bit further after getting back home tomorrow. It only happens through 'Apple-,' and is then not limited to just the Startup preferences (contrary to what I thought earlier). There is a bug report, PR#15017, related to this that we also have not been able to reproduce. Rob J. Goedman goedman at icloud.com <mailto:goedman at icloud.com <goedman at icloud.com>> On Jan 1, 2013, at 10:01 AM, Prof Brian Ripley <ripley at stats.ox.ac.uk <mailto:ripley at stats.ox.ac.uk <ripley at stats.ox.ac.uk>>> wrote: Sorry, cannot reproduce (with Simon's build or mine, on Lion). Brian On 31/12/2012 19:37, Robert J Goedman wrote: Simon & Brian, Surely this is not high on your minds today, but I did notice an issue with R.app. Using below versions of R-3.0 and the Lion64 version of R.app I noticed that by immediately invoking the Startup preferences. e.g. by Command/Apple-, R.app will segfault: *** caught segfault *** address 0x10121d000, cause 'memory not mapped' ... Above route seems to always create the crash. I've seen a few other occurrences, always with the Startup preferences screen not being mapped, but less reproducible. Same behavior in Simon's build as in my own build of R.app. A reasonable work around is to get there through the Set Colors icon. I'm on OSX8.3 preview 3 and using Xcode 4.6 dp4. And using the CRAN version of R, did not yet build R myself as outlined in the Install file. Happy New Year, regards, Rob J. Goedman goedman at icloud.com <mailto:goedman at icloud.com <goedman at icloud.com>> ------------ my own build---------------------------- R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered Consequences" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] [Workspace restored from /Users/rob/Projects/.RData] [History restored from /Users/rob/Projects/.Rapp.history] sessionInfo() R Under development (unstable) (2012-12-30 r61489) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base -------------R.app from Simon--------------------------------------------- R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered Consequences" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] [Workspace restored from /Users/rob/Projects/.RData] [History restored from /Users/rob/Projects/.Rapp.history] sessionInfo() R Under development (unstable) (2012-12-30 r61489) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base -- Brian D. Ripley, ripley at stats.ox.ac.uk <mailto:ripley at stats.ox.ac.uk<ripley at stats.ox.ac.uk>
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 On Oct 2, 2013, at 6:09 AM, Brandon Hurr <bhive01 at gmail.com> wrote: I cannot reproduce on my mac mini (2011). OS X 10.8.5. R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base On Wed, Oct 2, 2013 at 2:03 PM, John Magnotti <john.magnotti at gmail.com
wrote:
Going to the preferences screen in R.app (Command + , or R->preferences) and selecting any of the icons causes R to crash with a segfault. If I click any the tabs at the top of the preferences window R doesn't crash, but if I go back to the "show all" tab and choose an option it causes an immediate failure. I'm running OS X 10.8.5, sessionInfo pasted below Thoughts? John sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
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Rainer M. Krug email: RMKrug<at>gmail<dot>com
1 day later
I was just about to tell you guys that have the problem to try running R.app with gdb attached to the process. Then I realized that gdb has gone in Mavericks to be replaced by lldb, which I don't have much of a clue about how to operate.... However, at least the first few steps seem to be similar to using gdb: Get the process ID for R.app using Peters-iMac:~ pd$ ps aux | grep R.app pd 28620 0.1 0.5 3877356 21724 ?? S 1Nov13 0:43.29 /Applications/R.app/Contents/MacOS/R pd 74190 0.0 0.0 2432784 596 s005 S+ 11:45AM 0:00.01 grep R.app Then attach to it using Peters-iMac:~ pd$ lldb -p 28620 give your password to allow the debugger to control the process, then, when lldb fires up, tell it to resume the process (lldb) continue Process 28620 resuming Next, you should try doing whatever it takes to reproduce the crash, figure out how to get a traceback, and report back to the list. -pd
On 07 Nov 2013, at 10:19 , Rainer M Krug <Rainer at krugs.de> wrote:
I have to confirm both, the crash and the flashing of the colour wheel.
sessionInfo()
R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
version
_ platform x86_64-apple-darwin10.8.0 arch x86_64 os darwin10.8.0 system x86_64, darwin10.8.0 status major 3 minor 0.2 year 2013 month 09 day 25 svn rev 63987 language R version.string R version 3.0.2 (2013-09-25) nickname Frisbee Sailing
Cheers, Rainer On 11/07/13, 02:17 , John Magnotti wrote:
I removed my current R.app and installed the one at: http://r.research.att.com/#GUI R-3.0-branch-snowleopard-signed.pkg but I still get an immediate crash when I 1) open the preferences window and 2) click any of the icons in the main "Show All" screen (but not the tabs) I also noticed that switching away from either the Color or the Syntax tab briefly flashes (open then close) the color wheel selection dialog
sessionInfo()
R version 3.0.2 Patched (2013-11-04 r64155) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Is there any other specific information that would help? Thanks, John On Wed, Nov 6, 2013 at 10:12 AM, Brandon Hurr <bhive01 at gmail.com> wrote:
Robert, I never could reproduce what Brian, John or Ranier were seeing with my install (downloaded from http://r.research.att.com/ . Perhaps they could chime back in and give you more details. I'm now running Mavericks and still cannot replicate. R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Brandon On Wed, Nov 6, 2013 at 12:13 AM, Robert J Goedman <goedman at icloud.com>wrote:
Brandon, Do you still see this problem? Are you using Simon's build? Regards, Rob J. Goedman goedman at icloud.com On Jan 2, 2013, at 3:28 AM, Prof Brian Ripley <ripley at stats.ox.ac.uk> wrote: On 01/01/2013 17:48, Robert J Goedman wrote: Thanks for taking a look. I'll dig a bit further after getting back home tomorrow. It only happens through 'Apple-,' and is then not limited to just the Startup preferences (contrary to what I thought earlier). There is a bug report, PR#15017, related to this that we also have not been able to reproduce. Rob J. Goedman goedman at icloud.com <mailto:goedman at icloud.com <goedman at icloud.com>> On Jan 1, 2013, at 10:01 AM, Prof Brian Ripley <ripley at stats.ox.ac.uk <mailto:ripley at stats.ox.ac.uk <ripley at stats.ox.ac.uk>>> wrote: Sorry, cannot reproduce (with Simon's build or mine, on Lion). Brian On 31/12/2012 19:37, Robert J Goedman wrote: Simon & Brian, Surely this is not high on your minds today, but I did notice an issue with R.app. Using below versions of R-3.0 and the Lion64 version of R.app I noticed that by immediately invoking the Startup preferences. e.g. by Command/Apple-, R.app will segfault: *** caught segfault *** address 0x10121d000, cause 'memory not mapped' ... Above route seems to always create the crash. I've seen a few other occurrences, always with the Startup preferences screen not being mapped, but less reproducible. Same behavior in Simon's build as in my own build of R.app. A reasonable work around is to get there through the Set Colors icon. I'm on OSX8.3 preview 3 and using Xcode 4.6 dp4. And using the CRAN version of R, did not yet build R myself as outlined in the Install file. Happy New Year, regards, Rob J. Goedman goedman at icloud.com <mailto:goedman at icloud.com <goedman at icloud.com>> ------------ my own build---------------------------- R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered Consequences" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] [Workspace restored from /Users/rob/Projects/.RData] [History restored from /Users/rob/Projects/.Rapp.history] sessionInfo() R Under development (unstable) (2012-12-30 r61489) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base -------------R.app from Simon--------------------------------------------- R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered Consequences" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] [Workspace restored from /Users/rob/Projects/.RData] [History restored from /Users/rob/Projects/.Rapp.history] sessionInfo() R Under development (unstable) (2012-12-30 r61489) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base -- Brian D. Ripley, ripley at stats.ox.ac.uk <mailto:ripley at stats.ox.ac.uk<ripley at stats.ox.ac.uk>
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 On Oct 2, 2013, at 6:09 AM, Brandon Hurr <bhive01 at gmail.com> wrote: I cannot reproduce on my mac mini (2011). OS X 10.8.5. R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base On Wed, Oct 2, 2013 at 2:03 PM, John Magnotti <john.magnotti at gmail.com
wrote:
Going to the preferences screen in R.app (Command + , or R->preferences) and selecting any of the icons causes R to crash with a segfault. If I click any the tabs at the top of the preferences window R doesn't crash, but if I go back to the "show all" tab and choose an option it causes an immediate failure. I'm running OS X 10.8.5, sessionInfo pasted below Thoughts? John sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
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no more crashing for me thanks! John
sessionInfo()
R version 3.0.2 Patched (2013-11-11 r64202) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
On Sun, Nov 10, 2013 at 9:33 AM, Robert J Goedman <goedman at icloud.com> wrote:
Could someone with the preference problems try the latest nightly build for R.app to see if the patch helps? Thanks, Rob J. Goedman goedman at icloud.com On Nov 8, 2013, at 6:58 AM, Robert J Goedman <goedman at icloud.com> wrote:
Hi, Thanks for the feedback/updates. The flashing of the color chooser has been there for a long time but I don't think that is causing this problem. I can trigger the problem in Xcode and it shows clearly where it crashes. Its attempting to darken an icon image, pixel by pixel, but the image has no data if (on our systems at least) the 'Set Color' is not used as the path to get there. From what I've seen, it happens on a range of systems - below my sessionInfo(). The work around is simple and I think innocuous enough that I think I can commit. But it not very satisfactory not to get to the bottom of this and to understand why only some of us encounter this problem. Rob J. Goedman goedman at icloud.com [R.app GUI 1.62 (6588) x86_64-apple-darwin13.0.0] [Workspace restored from /Users/rob/Projects/.RData] [History restored from /Users/rob/Projects/.Rapp.history] 2013-11-08 06:42:18.669 R[65942:707] No data in destData (darkenedImageWithColor.m)
sessionInfo()
R Under development (unstable) (2013-10-30 r64123) Platform: x86_64-apple-darwin13.0.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] coda_0.16-1 grid_3.1.0 inline_0.3.13 lattice_0.20-25 Rcpp_0.10.6 rjags_3-11 rstan_2.0.1 [8] stats4_3.1.0
On Nov 8, 2013, at 3:00 AM, peter dalgaard <pdalgd at gmail.com> wrote:
I was just about to tell you guys that have the problem to try running R.app with gdb attached to the process. Then I realized that gdb has gone in Mavericks to be replaced by lldb, which I don't have much of a clue about how to operate.... However, at least the first few steps seem to be similar to using gdb: Get the process ID for R.app using Peters-iMac:~ pd$ ps aux | grep R.app pd 28620 0.1 0.5 3877356 21724 ?? S 1Nov13 0:43.29 /Applications/R.app/Contents/MacOS/R pd 74190 0.0 0.0 2432784 596 s005 S+ 11:45AM 0:00.01 grep R.app Then attach to it using Peters-iMac:~ pd$ lldb -p 28620 give your password to allow the debugger to control the process, then, when lldb fires up, tell it to resume the process (lldb) continue Process 28620 resuming Next, you should try doing whatever it takes to reproduce the crash, figure out how to get a traceback, and report back to the list. -pd On 07 Nov 2013, at 10:19 , Rainer M Krug <Rainer at krugs.de> wrote:
I have to confirm both, the crash and the flashing of the colour wheel.
sessionInfo()
R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
version
_ platform x86_64-apple-darwin10.8.0 arch x86_64 os darwin10.8.0 system x86_64, darwin10.8.0 status major 3 minor 0.2 year 2013 month 09 day 25 svn rev 63987 language R version.string R version 3.0.2 (2013-09-25) nickname Frisbee Sailing
Cheers, Rainer On 11/07/13, 02:17 , John Magnotti wrote:
I removed my current R.app and installed the one at: http://r.research.att.com/#GUI R-3.0-branch-snowleopard-signed.pkg but I still get an immediate crash when I 1) open the preferences window and 2) click any of the icons in the main "Show All" screen (but not the tabs) I also noticed that switching away from either the Color or the Syntax tab briefly flashes (open then close) the color wheel selection dialog
sessionInfo()
R version 3.0.2 Patched (2013-11-04 r64155) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Is there any other specific information that would help? Thanks, John On Wed, Nov 6, 2013 at 10:12 AM, Brandon Hurr <bhive01 at gmail.com> wrote:
Robert, I never could reproduce what Brian, John or Ranier were seeing with my install (downloaded from http://r.research.att.com/ . Perhaps they could chime back in and give you more details. I'm now running Mavericks and still cannot replicate. R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Brandon On Wed, Nov 6, 2013 at 12:13 AM, Robert J Goedman <goedman at icloud.com>wrote:
Brandon, Do you still see this problem? Are you using Simon's build? Regards, Rob J. Goedman goedman at icloud.com On Jan 2, 2013, at 3:28 AM, Prof Brian Ripley <ripley at stats.ox.ac.uk> wrote: On 01/01/2013 17:48, Robert J Goedman wrote: Thanks for taking a look. I'll dig a bit further after getting back home tomorrow. It only happens through 'Apple-,' and is then not limited to just the Startup preferences (contrary to what I thought earlier). There is a bug report, PR#15017, related to this that we also have not been able to reproduce. Rob J. Goedman goedman at icloud.com <mailto:goedman at icloud.com <goedman at icloud.com>> On Jan 1, 2013, at 10:01 AM, Prof Brian Ripley <ripley at stats.ox.ac.uk <mailto:ripley at stats.ox.ac.uk <ripley at stats.ox.ac.uk>>> wrote: Sorry, cannot reproduce (with Simon's build or mine, on Lion). Brian On 31/12/2012 19:37, Robert J Goedman wrote: Simon & Brian, Surely this is not high on your minds today, but I did notice an issue with R.app. Using below versions of R-3.0 and the Lion64 version of R.app I noticed that by immediately invoking the Startup preferences. e.g. by Command/Apple-, R.app will segfault: *** caught segfault *** address 0x10121d000, cause 'memory not mapped' ... Above route seems to always create the crash. I've seen a few other occurrences, always with the Startup preferences screen not being mapped, but less reproducible. Same behavior in Simon's build as in my own build of R.app. A reasonable work around is to get there through the Set Colors icon. I'm on OSX8.3 preview 3 and using Xcode 4.6 dp4. And using the CRAN version of R, did not yet build R myself as outlined in the Install file. Happy New Year, regards, Rob J. Goedman goedman at icloud.com <mailto:goedman at icloud.com <goedman at icloud.com>> ------------ my own build---------------------------- R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered Consequences" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] [Workspace restored from /Users/rob/Projects/.RData] [History restored from /Users/rob/Projects/.Rapp.history] sessionInfo() R Under development (unstable) (2012-12-30 r61489) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base -------------R.app from Simon--------------------------------------------- R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered Consequences" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] [Workspace restored from /Users/rob/Projects/.RData] [History restored from /Users/rob/Projects/.Rapp.history] sessionInfo() R Under development (unstable) (2012-12-30 r61489) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base -- Brian D. Ripley, ripley at stats.ox.ac.uk <mailto:ripley at stats.ox.ac.uk<ripley at stats.ox.ac.uk>
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 On Oct 2, 2013, at 6:09 AM, Brandon Hurr <bhive01 at gmail.com> wrote: I cannot reproduce on my mac mini (2011). OS X 10.8.5. R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base On Wed, Oct 2, 2013 at 2:03 PM, John Magnotti <john.magnotti at gmail.com
wrote:
Going to the preferences screen in R.app (Command + , or R->preferences) and selecting any of the icons causes R to crash with a segfault. If I click any the tabs at the top of the preferences window R doesn't crash, but if I go back to the "show all" tab and choose an option it causes an immediate failure. I'm running OS X 10.8.5, sessionInfo pasted below Thoughts? John sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
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-- Rainer M. Krug email: RMKrug<at>gmail<dot>com
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
-- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd.mes at cbs.dk Priv: PDalgd at gmail.com
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