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R crashes with OSX 10.9 ?
5 messages · Vincent Philion, Simon Urbanek
Hello again, to further document = if I select to ?abort?, the following report is sent to Apple (portion of report) Process: R [2150] Path: /Applications/R.app/Contents/MacOS/R Identifier: org.R-project.R Version: R 3.0.1 GUI 1.61 Snow Leopard build (6492) Code Type: X86-64 (Native) Parent Process: launchd [252] Responsible: R [2150] User ID: 503 Date/Time: 2013-06-26 12:44:57.496 -0400 OS Version: Mac OS X 10.9 (13A497d) Report Version: 11 Anonymous UUID: FDE00247-F8B3-25C1-B799-942C4823E9B2 Sleep/Wake UUID: 190054C0-34B5-4355-B717-91749ECB2FDE Crashed Thread: 1 Exception Type: EXC_CRASH (SIGSEGV) Exception Codes: 0x0000000000000000, 0x0000000000000000 Thread 0:: Dispatch queue: com.apple.main-thread 0 libsystem_c.dylib 0x00007fff84f378f2 strlen + 18 1 libobjc.A.dylib 0x00007fff8d89612d objc_opt::objc_stringhash_t::getIndex(char const*) const + 25 Thread 1 Crashed: 0 libsystem_kernel.dylib 0x00007fff85bbde9a __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fff8c384f4e _pthread_wqthread + 324 2 libsystem_pthread.dylib 0x00007fff8c387fd9 start_wqthread + 13
On 26juin, 2013, at 12:42 PM, Vincent Philion <vincent.philion at irda.qc.ca> wrote:
Hi! I had a working R installation before I got carried away and installed the OSX ?Maverick? developer preview. Now, any error in R results in a crash. ex:
1+1
[1] 2
()
Error: unexpected ')' in "()" *** caught segfault *** address 0x7c0, cause 'memory not mapped' Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace Selection: Help? Vincent Philion, agr., M.Sc. Microbiologiste/Phytopathologiste (pomiculture) Institut de recherche et de d?veloppement en agro-environnement Research and Development Institute for the Agri-Environment www.irda.qc.ca<http://www.irda.qc.ca> Centre de recherche 335, chemin des Vingt-Cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 0G7 vincent.philion at irda.qc.ca<mailto:vincent.philion at irda.qc.ca> Bureau: 450 653-7368 #350 Cellulaire: 514-623-8275 Skype: VENTURIA T?l?copie: 450 653-1927 Verger exp?rimental 330, Rang des vingt-cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 4P6 T?l?phone et t?l?copieur : 450 653-8375 Pour nous trouver, cliquer sur le lien: Laboratoire<http://maps.google.ca/maps/place?cid=9609486867104665866&q=irda+pfi&hl=fr&sll=45.557814,-73.360476&sspn=8.87586,1.961403&ie=UTF8&ll=45.557814,-73.360476&spn=0,0&z=16> Verger<http://maps.google.ca/maps/place?cid=11405391288824931904&q=verger+irda&hl=fr&sll=45.54961,-73.350585&sspn=0.012504,0.018389&ie=UTF8&ll=45.54961,-73.350585&spn=0,0&z=16> [[alternative HTML version deleted]]
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Vincent Philion, agr., M.Sc. Microbiologiste/Phytopathologiste (pomiculture) Institut de recherche et de d?veloppement en agro-environnement Research and Development Institute for the Agri-Environment www.irda.qc.ca Centre de recherche 335, chemin des Vingt-Cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 0G7 vincent.philion at irda.qc.ca Bureau: 450 653-7368 #350 Cellulaire: 514-623-8275 Skype: VENTURIA T?l?copie: 450 653-1927 Verger exp?rimental 330, Rang des vingt-cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 4P6 T?l?phone et t?l?copieur : 450 653-8375 Pour nous trouver, cliquer sur le lien: Laboratoire Verger
Hi! Sorry for the multiple emails: I think this can help knowledgeable people solve this issue: If I use Rstudio on the same computer, all is good.
1+1
[1] 2
()
Error: unexpected ?)' in "()" My conclusion: it?s really R 3.0.1 GUI 1.61 Snow Leopard build (6492) that is not happy with 10.9 (developer version #2) Take home lesson: I should stay away of development software when I have work to do! ;-) Vincent
On 26juin, 2013, at 12:47 PM, Vincent Philion <vincent.philion at irda.qc.ca> wrote:
Hello again, to further document = if I select to ?abort?, the following report is sent to Apple (portion of report) Process: R [2150] Path: /Applications/R.app/Contents/MacOS/R Identifier: org.R-project.R Version: R 3.0.1 GUI 1.61 Snow Leopard build (6492) Code Type: X86-64 (Native) Parent Process: launchd [252] Responsible: R [2150] User ID: 503 Date/Time: 2013-06-26 12:44:57.496 -0400 OS Version: Mac OS X 10.9 (13A497d) Report Version: 11 Anonymous UUID: FDE00247-F8B3-25C1-B799-942C4823E9B2 Sleep/Wake UUID: 190054C0-34B5-4355-B717-91749ECB2FDE Crashed Thread: 1 Exception Type: EXC_CRASH (SIGSEGV) Exception Codes: 0x0000000000000000, 0x0000000000000000 Thread 0:: Dispatch queue: com.apple.main-thread 0 libsystem_c.dylib 0x00007fff84f378f2 strlen + 18 1 libobjc.A.dylib 0x00007fff8d89612d objc_opt::objc_stringhash_t::getIndex(char const*) const + 25 Thread 1 Crashed: 0 libsystem_kernel.dylib 0x00007fff85bbde9a __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fff8c384f4e _pthread_wqthread + 324 2 libsystem_pthread.dylib 0x00007fff8c387fd9 start_wqthread + 13 On 26juin, 2013, at 12:42 PM, Vincent Philion <vincent.philion at irda.qc.ca> wrote:
Hi! I had a working R installation before I got carried away and installed the OSX ?Maverick? developer preview. Now, any error in R results in a crash. ex:
1+1
[1] 2
()
Error: unexpected ')' in "()" *** caught segfault *** address 0x7c0, cause 'memory not mapped' Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace Selection: Help? Vincent Philion, agr., M.Sc. Microbiologiste/Phytopathologiste (pomiculture) Institut de recherche et de d?veloppement en agro-environnement Research and Development Institute for the Agri-Environment www.irda.qc.ca<http://www.irda.qc.ca> Centre de recherche 335, chemin des Vingt-Cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 0G7 vincent.philion at irda.qc.ca<mailto:vincent.philion at irda.qc.ca> Bureau: 450 653-7368 #350 Cellulaire: 514-623-8275 Skype: VENTURIA T?l?copie: 450 653-1927 Verger exp?rimental 330, Rang des vingt-cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 4P6 T?l?phone et t?l?copieur : 450 653-8375 Pour nous trouver, cliquer sur le lien: Laboratoire<http://maps.google.ca/maps/place?cid=9609486867104665866&q=irda+pfi&hl=fr&sll=45.557814,-73.360476&sspn=8.87586,1.961403&ie=UTF8&ll=45.557814,-73.360476&spn=0,0&z=16> Verger<http://maps.google.ca/maps/place?cid=11405391288824931904&q=verger+irda&hl=fr&sll=45.54961,-73.350585&sspn=0.012504,0.018389&ie=UTF8&ll=45.54961,-73.350585&spn=0,0&z=16> [[alternative HTML version deleted]]
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Vincent Philion, agr., M.Sc. Microbiologiste/Phytopathologiste (pomiculture) Institut de recherche et de d?veloppement en agro-environnement Research and Development Institute for the Agri-Environment www.irda.qc.ca Centre de recherche 335, chemin des Vingt-Cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 0G7 vincent.philion at irda.qc.ca Bureau: 450 653-7368 #350 Cellulaire: 514-623-8275 Skype: VENTURIA T?l?copie: 450 653-1927 Verger exp?rimental 330, Rang des vingt-cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 4P6 T?l?phone et t?l?copieur : 450 653-8375 Pour nous trouver, cliquer sur le lien: Laboratoire Verger
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Vincent Philion, agr., M.Sc. Microbiologiste/Phytopathologiste (pomiculture) Institut de recherche et de d?veloppement en agro-environnement Research and Development Institute for the Agri-Environment www.irda.qc.ca Centre de recherche 335, chemin des Vingt-Cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 0G7 vincent.philion at irda.qc.ca Bureau: 450 653-7368 #350 Cellulaire: 514-623-8275 Skype: VENTURIA T?l?copie: 450 653-1927 Verger exp?rimental 330, Rang des vingt-cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 4P6 T?l?phone et t?l?copieur : 450 653-8375 Pour nous trouver, cliquer sur le lien: Laboratoire Verger
On Jun 26, 2013, at 12:42 PM, Vincent Philion wrote:
Hi! I had a working R installation before I got carried away and installed the OSX ?Maverick? developer preview. Now, any error in R results in a crash. ex:
1+1
[1] 2
()
Error: unexpected ')' in "()" *** caught segfault *** address 0x7c0, cause 'memory not mapped' Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace Selection: Help?
Wait for a stable 10.9 ;) It's a DP after all. You can also build the GUI yourself for 10.9 - this works for me (10.9 DP2 + Xcode 5 DP2): svn co https://svn.r-project.org/R-packages/trunk/Mac-GUI cd Mac-GUI xcodebuild -configuration Debug open build/Debug/R.app Cheers, Simon
Vincent Philion, agr., M.Sc. Microbiologiste/Phytopathologiste (pomiculture) Institut de recherche et de d?veloppement en agro-environnement Research and Development Institute for the Agri-Environment www.irda.qc.ca<http://www.irda.qc.ca> Centre de recherche 335, chemin des Vingt-Cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 0G7 vincent.philion at irda.qc.ca<mailto:vincent.philion at irda.qc.ca> Bureau: 450 653-7368 #350 Cellulaire: 514-623-8275 Skype: VENTURIA T?l?copie: 450 653-1927 Verger exp?rimental 330, Rang des vingt-cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 4P6 T?l?phone et t?l?copieur : 450 653-8375 Pour nous trouver, cliquer sur le lien: Laboratoire<http://maps.google.ca/maps/place?cid=9609486867104665866&q=irda+pfi&hl=fr&sll=45.557814,-73.360476&sspn=8.87586,1.961403&ie=UTF8&ll=45.557814,-73.360476&spn=0,0&z=16> Verger<http://maps.google.ca/maps/place?cid=11405391288824931904&q=verger+irda&hl=fr&sll=45.54961,-73.350585&sspn=0.012504,0.018389&ie=UTF8&ll=45.54961,-73.350585&spn=0,0&z=16> [[alternative HTML version deleted]]
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The most recent nightlies (from r.research.att.com ) now work on 10.9. The issue is probably in the 10.9 OS, related to autorelease pools (Apple has broken things there before), but disabling optimization for one file seems to work around it ... Cheers, Simon
On Jun 26, 2013, at 13:22, Simon Urbanek <simon.urbanek at r-project.org> wrote:
On Jun 26, 2013, at 12:42 PM, Vincent Philion wrote:
Hi! I had a working R installation before I got carried away and installed the OSX ?Maverick? developer preview. Now, any error in R results in a crash. ex:
1+1
[1] 2
()
Error: unexpected ')' in "()" *** caught segfault *** address 0x7c0, cause 'memory not mapped' Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace Selection: Help?
Wait for a stable 10.9 ;) It's a DP after all. You can also build the GUI yourself for 10.9 - this works for me (10.9 DP2 + Xcode 5 DP2): svn co https://svn.r-project.org/R-packages/trunk/Mac-GUI cd Mac-GUI xcodebuild -configuration Debug open build/Debug/R.app Cheers, Simon
Vincent Philion, agr., M.Sc. Microbiologiste/Phytopathologiste (pomiculture) Institut de recherche et de d?veloppement en agro-environnement Research and Development Institute for the Agri-Environment www.irda.qc.ca<http://www.irda.qc.ca> Centre de recherche 335, chemin des Vingt-Cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 0G7 vincent.philion at irda.qc.ca<mailto:vincent.philion at irda.qc.ca> Bureau: 450 653-7368 #350 Cellulaire: 514-623-8275 Skype: VENTURIA T?l?copie: 450 653-1927 Verger exp?rimental 330, Rang des vingt-cinq Est Saint-Bruno-de-Montarville (Qu?bec) J3V 4P6 T?l?phone et t?l?copieur : 450 653-8375 Pour nous trouver, cliquer sur le lien: Laboratoire<http://maps.google.ca/maps/place?cid=9609486867104665866&q=irda+pfi&hl=fr&sll=45.557814,-73.360476&sspn=8.87586,1.961403&ie=UTF8&ll=45.557814,-73.360476&spn=0,0&z=16> Verger<http://maps.google.ca/maps/place?cid=11405391288824931904&q=verger+irda&hl=fr&sll=45.54961,-73.350585&sspn=0.012504,0.018389&ie=UTF8&ll=45.54961,-73.350585&spn=0,0&z=16> [[alternative HTML version deleted]]
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac