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mach_override
10 messages · Keith Weintraub, Steve Lianoglou, Berend Hasselman +1 more
Hi Keith,
On Sat, Sep 1, 2012 at 11:26 AM, Keith Weintraub <kw1958 at gmail.com> wrote:
I previously posted this message to r-help-request and it was suggested that I post here instead. Note that I have re-installed R and gotten the same result. Folks, I just upgraded my Mac to Mountain Lion and on running R.app I get the following message: mach_override: some instructions unknown! Need to update mach_override.c err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:215 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:228 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:234 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:248 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:253 Note that I have loaded no packages nor run anything else on start-up.
Hmm ... I have no answers for you, but it seems like you are not alone: http://forum.processing.org/topic/problem-mach-override-some-instructions-unknown-need-to-update-mach-override-c Does this happens right when you startup up R.app, or after you run a particular command, or ... ? Do you get this message when you start R from the terminal? How about if you fire it up with `R --vanilla` (to skip over loading some stuff you might be loading but didn't realize). What if you use R via RStudio (rstudio.org)? -steve
Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact
On 01-09-2012, at 17:26, Keith Weintraub wrote:
I previously posted this message to r-help-request and it was suggested that I post here instead. Note that I have re-installed R and gotten the same result. Folks, I just upgraded my Mac to Mountain Lion and on running R.app I get the following message: mach_override: some instructions unknown! Need to update mach_override.c err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:215 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:228 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:234 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:248 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:253
Are you running DefaultFolderX? Which version? If yes then see this: http://www.stclairsw.com/DefaultFolderX/beta.html Berend
Note that I have loaded no packages nor run anything else on start-up. Here is my session info:
sessionInfo()
R version 2.15.1 (2012-06-22) Platform: i386-apple-darwin9.8.0/i386 (32-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.15.1 Does this relate to my upgrade or something else? Is there a way to fix this. One thing that I have noticed (after updating all my installed packages) is that much of ggplot2 will not work for me anymore. Thanks for your time, KW -- [[alternative HTML version deleted]]
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On Sat, Sep 1, 2012 at 6:33 PM, Keith Weintraub <kw1958 at gmail.com> wrote:
I installed DefaultFolderX 4.5b1 according to the link you provided and have the same issue.
So, I guess uninstalling DefaultFolderX fixes (sidesteps) the issue, no? Does R.app crash or is it just firing a warning that you can just ignore and carry on? -steve
Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact
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This is a typical issue illustrating why haxies are a bad idea and a huge security risk - they get loaded into every application, so the code producing those errors is not actually R.app but a broken haxie (here DefaultFolderX). It has absolutely nothing to do with R ... it's 3rd party code injected into R at user's request so R can't do anything about it ... :/
On Sep 1, 2012, at 8:32 PM, Keith Weintraub wrote:
Well, I could have sworn there were problems with examples from http://groups.google.com/group/ggplot2/topics But now I can't find any issues. R.app does not crash but gives the following warning (I think this is in a previous message in this thread): [R.app GUI 1.52 (6188) i386-apple-darwin9.8.0] [History restored from /Users/kw/R/.Rhistory] mach_override: some instructions unknown! Need to update mach_override.c err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:215 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:228 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:234 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:248 err = f8000001 /Volumes/Haxdisk/Projects/DefaultFolderX/DFCarbonPatch/../../Libraries/mach_star-1.2-intel-0.3/mach_override/mach_override.c:253 Kind-of scary to see "some instructions unknown". Maybe it won't come back to byte me. Note that I don't have anything in a start up file and I run with no workspace saved. I am somewhat surprised that no-one else has had this issue. I can't be the only person that uses R.app on a MacbookPro that has been upgraded to Mountain Lion. Strange! I will respond to any requests for more info and I will keep looking at this thread to see if a solution is published. Thanks so much for all the time, KW -- On Sep 1, 2012, at 6:42 PM, Steve Lianoglou <mailinglist.honeypot at gmail.com> wrote:
On Sat, Sep 1, 2012 at 6:33 PM, Keith Weintraub <kw1958 at gmail.com> wrote:
I installed DefaultFolderX 4.5b1 according to the link you provided and have the same issue.
So, I guess uninstalling DefaultFolderX fixes (sidesteps) the issue, no? Does R.app crash or is it just firing a warning that you can just ignore and carry on? -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact
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